CuGenDBv2

Gene ID	Lag0019867
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	chr5:46197213..46200338
RNA-Seq Expression	Lag0019867
Synteny	Lag0019867
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

1.1e-138

79.1

Show/hide

Query:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN
        MKN D SPPRRKVKFAP+S+ RRR  PPP  KTEDEDGE    QTRYLLRRA ENLGKR NKVE+KSSVQVAFGPGA S SSSIRTYGVPKV N SRK++
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN

Query:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE
        IEPE  +DEE + P+ MDV EDGK FD+KT+DGIAE   ++++A+VTKTK+ YKEPWDY NSYYP TLP+RMPYSGDPE LDEAEFGQDA NREY+EN+ 
Subjt:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE

Query:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        IPALDLGL +EN ENT+YFFQLPA LPLPKQSSTATGKEKVG SRSS+ST +S+L DLKKL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Subjt:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINTE+GQCCDLGDIGKRVVVTPDISSLLNSV +
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

KAG6576814.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-139

77.91

Show/hide

Query:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS---SSSIRTYGVPKVGNRSRKSN
        MKNPDPSPPRRK+KFAP+STPRRRPPPA KTEDED   N  QTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS   SSSIRTYGVPK+GN SRK +
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS---SSSIRTYGVPKVGNRSRKSN

Query:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE
        IEPE A+DEE I PLPMD EE GK  ++KTED              TK  K YKEPWDY NSYYP TLP+RMPYSGDPE+LDEAEFGQD  +REY+EN+ 
Subjt:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE

Query:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        IPALDLGLL+EN+ENTRYFFQLPACLP PK+SST+TGKEKVG  RSS ST +SELGDL+ LPGG MGKLLIYKSGA+KLRLGDTLYDVSSG +CSFLQHV
Subjt:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINT++GQCCDLG+IGKRVVVTPDI SLLNS+ D
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

XP_022141050.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Momordica charantia]

5.5e-146

82.09

Show/hide

Query:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI
        MKNPDPS  PRRKVKFAP+ TPR+RPPPA K EDEDG +N  QTRYLLRRATENLGKRG KVEKK SVQVAFGPGAAS SSSIRTYGVPKVGN SRK+NI
Subjt:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI

Query:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI
        EPE +DDEESI PLP+DVEEDG +FDQK+EDG  E AMATNA ++TK KK Y+EPWDY +SYYPNTLP+R PYSG PELLD+AEFG DA +REY+ENA I
Subjt:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI

Query:  PALDLGLL-EENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        PALDL LL EE  E T YFFQLPACLPLPKQSSTAT KEKVG SRSS+S GTSELGDLKKLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHV
Subjt:  PALDLGLL-EENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINTEEG CCDLGD+GKRVVVTPDISSLLN+V D
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

XP_022141051.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charantia]

2.2e-147

82.34

Show/hide

Query:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI
        MKNPDPS  PRRKVKFAP+ TPR+RPPPA K EDEDG +N  QTRYLLRRATENLGKRG KVEKK SVQVAFGPGAAS SSSIRTYGVPKVGN SRK+NI
Subjt:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI

Query:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI
        EPE +DDEESI PLP+DVEEDG +FDQK+EDG  E AMATNA ++TK KK Y+EPWDY +SYYPNTLP+R PYSG PELLD+AEFG DA +REY+ENA I
Subjt:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI

Query:  PALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV
        PALDL LLEE  E T YFFQLPACLPLPKQSSTAT KEKVG SRSS+S GTSELGDLKKLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHVV
Subjt:  PALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV

Query:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        AINTEEG CCDLGD+GKRVVVTPDISSLLN+V D
Subjt:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

6.7e-144

81.08

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Query:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNIE
        MKNPD SPPRRKVKFAP+S PRRRPPP  K EDEDG+    QTRYLLRRATENLGKRGNKV++KSSVQVAFGPGAAS SSSIRTYGVPKV N SRK++IE
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNIE

Query:  PEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEIP
        P+  +DEE I PLPMDVEE+GK+FD+KT+DGIAE   ++++AIVTKTKK YKEPWDY NS YP TLPIRMPYSGDPE LDEAEFGQDAT+REY+E++ IP
Subjt:  PEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEIP

Query:  ALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVA
        ALDLGLL+E  ENT+YFFQLPA LPLPKQSSTATGKEKVG  RSS S G+SELGDLKKL  GCMGKLLIYKSGAIKLRLGDTLYDVSSGS+CSFLQHVVA
Subjt:  ALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVA

Query:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        INT+EGQCCDLGDIGKRV+VTPDISSLLNS+ +
Subjt:  INTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

2.7e-138

79.1

Show/hide

Query:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN
        MKN D SPPRRKVKFAP+S+ RRR  PPP  KTEDEDGE    QTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S SSSIRTYGVPKV N SRK++
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN

Query:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE
        IEPE  +DEE + P+ MDV EDGK FD+KT+DGIAE   ++++A+VTKTK+ YKEPWDY NSYYP TLP+RMPYSGD E LDEAEFGQDA NREY+EN+ 
Subjt:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE

Query:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        IPALDLGL +EN ENT+YFFQLPA LPLPKQSSTATGKEKVG SRSS+ST +S+L DLKKL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Subjt:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINTE+GQCCDLGDIGKRVVVTPDISSLLNSV +
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

5.4e-139

79.1

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Query:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN
        MKN D SPPRRKVKFAP+S+ RRR  PPP  KTEDEDGE    QTRYLLRRA ENLGKR NKVE+KSSVQVAFGPGA S SSSIRTYGVPKV N SRK++
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRR--PPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSN

Query:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE
        IEPE  +DEE + P+ MDV EDGK FD+KT+DGIAE   ++++A+VTKTK+ YKEPWDY NSYYP TLP+RMPYSGDPE LDEAEFGQDA NREY+EN+ 
Subjt:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE

Query:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        IPALDLGL +EN ENT+YFFQLPA LPLPKQSSTATGKEKVG SRSS+ST +S+L DLKKL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Subjt:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINTE+GQCCDLGDIGKRVVVTPDISSLLNSV +
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

A0A6J1CGV5 DNA-directed RNA polymerase III subunit RPC4-like isoform X1

2.7e-146

82.09

Show/hide

Query:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI
        MKNPDPS  PRRKVKFAP+ TPR+RPPPA K EDEDG +N  QTRYLLRRATENLGKRG KVEKK SVQVAFGPGAAS SSSIRTYGVPKVGN SRK+NI
Subjt:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI

Query:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI
        EPE +DDEESI PLP+DVEEDG +FDQK+EDG  E AMATNA ++TK KK Y+EPWDY +SYYPNTLP+R PYSG PELLD+AEFG DA +REY+ENA I
Subjt:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI

Query:  PALDLGLL-EENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        PALDL LL EE  E T YFFQLPACLPLPKQSSTAT KEKVG SRSS+S GTSELGDLKKLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHV
Subjt:  PALDLGLL-EENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINTEEG CCDLGD+GKRVVVTPDISSLLN+V D
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

A0A6J1CHV0 DNA-directed RNA polymerase III subunit RPC4-like isoform X2

1.1e-147

82.34

Show/hide

Query:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI
        MKNPDPS  PRRKVKFAP+ TPR+RPPPA K EDEDG +N  QTRYLLRRATENLGKRG KVEKK SVQVAFGPGAAS SSSIRTYGVPKVGN SRK+NI
Subjt:  MKNPDPSP-PRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS-SSSIRTYGVPKVGNRSRKSNI

Query:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI
        EPE +DDEESI PLP+DVEEDG +FDQK+EDG  E AMATNA ++TK KK Y+EPWDY +SYYPNTLP+R PYSG PELLD+AEFG DA +REY+ENA I
Subjt:  EPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI

Query:  PALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV
        PALDL LLEE  E T YFFQLPACLPLPKQSSTAT KEKVG SRSS+S GTSELGDLKKLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHVV
Subjt:  PALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV

Query:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        AINTEEG CCDLGD+GKRVVVTPDISSLLN+V D
Subjt:  AINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like

5.4e-139

77.61

Show/hide

Query:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS---SSSIRTYGVPKVGNRSRKSN
        MKNPDPSPPRRK+KFAP+STPRRRPPPA KTEDED   N  QTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS   SSSIRTYGVPK+GN SRK +
Subjt:  MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAAS---SSSIRTYGVPKVGNRSRKSN

Query:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE
        IEPE A+DEE I P PMD EE GK  ++KTED              TK  K YKEPWDY NSYYP TLP+RMPYSGDPE+LDEAEFGQD  +REY+EN+ 
Subjt:  IEPEDADDEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAE

Query:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
        IPALDLGLL+EN+ENTRYFFQLPACLP PK+SST+TGKEKVG  RSS ST +SELGDL+ LPGG MGKLLIYKSGA+KLRLGDTLYDVSSG +CSFLQHV
Subjt:  IPALDLGLLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAINT++GQCCDLG+IGKRVVVTPDI SLLNS+ D
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

1.6e-07

41.56

Show/hide

Query:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

P25441 DNA-directed RNA polymerase III subunit RPC4

4.9e-04

27.35

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Query:  FQLPACLPLPKQSSTATGKEKVGRSRSSSS--------TGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAIN-TEEGQC
        FQLP  LP  ++ +    KE +    S  S          T +    ++L  G +G + ++KSG + +++G+ + D+  G+  +FLQ V+A++  ++   
Subjt:  FQLPACLPLPKQSSTATGKEKVGRSRSSSS--------TGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAIN-TEEGQC

Query:  CD-LGDIGKRVVVTPDI
         + LG +  ++VVTP I
Subjt:  CD-LGDIGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

6.2e-07

38.14

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Query:  KEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        +EK   +R + +T T     L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G    LG I  ++V +P+  SLL+
Subjt:  KEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc4

6.8e-06

37.66

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Query:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEG-----QCCDLGDIGKRVVVTPDISSL
        +K++P G +G L IYKSG   L++G   YD+SSG    FL+ V    T+ G      C  LG   + +V  P IS +
Subjt:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEG-----QCCDLGDIGKRVVVTPDISSL

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

9.5e-08

41.56

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Query:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN
        L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

3.1e-46

39.7

Show/hide

Query:  DPSPPRRKVKFAPR-STPRRRPP--PAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASSSSIRTYGVPKVGNRSRKSNIEPE
        D    + K +F P    P RR P  P + TE E+ E N   +R   RR    +G+R     K SS +VAF P + S  +IR++GVPK  ++   S++ P 
Subjt:  DPSPPRRKVKFAPR-STPRRRPP--PAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASSSSIRTYGVPKVGNRSRKSNIEPE

Query:  DADDEESIFPLPMDV---EEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI
              SI P    V   +EDG+                     VT+T   Y EPWDY NSYYP  LP+R P SGD ELLD+ EFG+ A NR+Y+EN   
Subjt:  DADDEESIFPLPMDV---EEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEI

Query:  PALDLGLLE-ENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV
         A +LGL   ++++   + F++P CLP+ KQ++ AT K    RS    S+G S     + LP G MGK+L+YKSGA+KL++GD L+DVS G        V
Subjt:  PALDLGLLE-ENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD
        VAI+ +   C  +G   K V VTPD+ SLLN  +D
Subjt:  VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSVAD

AT5G09380.1 RNA polymerase III RPC4

3.0e-41

36.2

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Query:  DPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASSSSIRTYGVPKVGNRSRKSNIEPEDAD
        +  PP RK+KFAP++ P+R P P  K E  +   N  Q   LLRR  E   ++    +K  + QVA+  G  +S+    Y      NRS  +        
Subjt:  DPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASSSSIRTYGVPKVGNRSRKSNIEPEDAD

Query:  DEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEIPALDLG
                       G    Q+ E                     YKEPWDY  SYYP TLP+R PY+GDPE+LD  EF Q   + E + N    A +LG
Subjt:  DEESIFPLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEIPALDLG

Query:  LLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEE
        L+E++ E   +F +LP+ +PL      +T  E +    +       +  DLK LP G MGKLL+YKSGA+K++LG+ LYDVS G    F Q V+ +NTE+
Subjt:  LLEENAENTRYFFQLPACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEE

Query:  GQCCDLGDIGKRVVVTPDISSLLNSV
          CC +GD+ K  V+TPDI S+L  +
Subjt:  GQCCDLGDIGKRVVVTPDISSLLNSV

Sequences

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CDS sequence

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ATGAAGAATCCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCCCCAAGATCCACACCGCGCAGAAGGCCACCCCCCGCTGCAAAAACTGAAGACGAAGATGGCGA
GCGTAATTTTACACAAACTCGCTACCTCTTACGCCGAGCCACTGAGAATCTCGGAAAACGTGGGAACAAGGTCGAGAAAAAATCTTCAGTGCAAGTCGCCTTCGGTCCGG
GGGCGGCATCATCATCATCAATTAGAACATATGGAGTTCCCAAAGTGGGAAACAGAAGTAGAAAGAGTAACATTGAGCCTGAAGATGCTGATGATGAGGAATCTATCTTC
CCTCTGCCTATGGATGTCGAAGAAGATGGGAAAGTTTTCGATCAAAAAACCGAAGATGGAATAGCCGAATTCGCTATGGCAACCAATGCTGCTATAGTAACCAAAACCAA
GAAGGCTTACAAAGAACCTTGGGATTACCTTAATTCTTACTATCCTAATACGCTTCCTATTCGAATGCCTTACTCTGGAGACCCTGAACTGCTTGATGAAGCTGAATTCG
GGCAGGATGCGACGAATAGGGAGTATAATGAGAATGCTGAAATACCTGCCTTGGATCTTGGATTGTTGGAGGAAAATGCTGAGAATACCAGGTACTTTTTTCAGCTTCCT
GCCTGTCTTCCTTTACCCAAACAATCATCTACTGCAACGGGAAAGGAAAAAGTAGGACGTTCGAGATCTTCGAGTAGCACAGGCACGTCGGAGCTCGGCGATTTGAAGAA
ACTGCCCGGTGGATGTATGGGAAAACTATTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATACTCTTTATGATGTATCTTCAGGTTCAAACTGCAGTTTTC
TTCAACACGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGCGATCTCGGAGACATCGGCAAACGAGTCGTCGTGACACCGGATATTAGTTCCCTCTTGAATTCAGTG
GCTGACTGA

mRNA sequence

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Protein sequence

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MKNPDPSPPRRKVKFAPRSTPRRRPPPAAKTEDEDGERNFTQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASSSSIRTYGVPKVGNRSRKSNIEPEDADDEESIF
PLPMDVEEDGKVFDQKTEDGIAEFAMATNAAIVTKTKKAYKEPWDYLNSYYPNTLPIRMPYSGDPELLDEAEFGQDATNREYNENAEIPALDLGLLEENAENTRYFFQLP
ACLPLPKQSSTATGKEKVGRSRSSSSTGTSELGDLKKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGKRVVVTPDISSLLNSV
AD

Lag0019867 (gene) of Sponge gourd (AG-4) v1 genome