CuGenDBv2

Gene ID	Lag0019877
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	structural maintenance of chromosomes protein 6B-like
Genome location	chr5:46301236..46304873
RNA-Seq Expression	Lag0019877
Synteny	Lag0019877
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0030915 - Smc5-Smc6 complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR027132 - Structural maintenance of chromosomes protein 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600185.1 Structural maintenance of chromosomes protein 6B, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-136

56.49

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVT+H+DSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSV FDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L    R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

XP_022942166.1 structural maintenance of chromosomes protein 6B-like isoform X1 [Cucurbita moschata]

3.7e-136

56.49

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVT+H+DSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSV FDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L    R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

XP_022942167.1 structural maintenance of chromosomes protein 6B-like isoform X2 [Cucurbita moschata]

3.7e-136

56.49

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVT+H+DSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSV FDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L    R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

XP_022990852.1 structural maintenance of chromosomes protein 6B-like isoform X1 [Cucurbita maxima]

8.8e-138

57.04

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVTDHRDSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L+   R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

XP_022990861.1 structural maintenance of chromosomes protein 6B-like isoform X2 [Cucurbita maxima]

8.8e-138

57.04

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVTDHRDSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L+   R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CJK5 structural maintenance of chromosomes protein 6B-like

1.6e-132

55.6

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVE--------------------
        + + ++++   IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIFDQLRS+NALVDDLESTIRPVE                    
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVE--------------------

Query:  ------KYPLDFIYLFSFIS---------------------------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
              K  L + +++                               G VEKLRER IEKKAQIASMMEKTSEVRRMKDELQETLSLATRE  GLEEEH 
Subjt:  ------KYPLDFIYLFSFIS---------------------------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ MVKR RLLEQQVHDI EQHM+NTQAEESEIEEKLKELE ESEA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVTDHRDSL+LRGCANEANYK LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        L+IPAHMLPQT+HPTTLSV+HSENHTVINVL+DKGDAERQVLVKDYDVGKSVAFDQ     + +  +  Y    F    V+TILPP RRPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQC
        D IKSLE+D  +VKEE E+CRKRKRAAEEQL DL+E L+   R+C
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQC

A0A6J1FN31 structural maintenance of chromosomes protein 6B-like isoform X1

1.8e-136

56.49

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVT+H+DSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSV FDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L    R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

A0A6J1FPH4 structural maintenance of chromosomes protein 6B-like isoform X2

1.8e-136

56.49

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVT+H+DSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSV FDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L    R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

A0A6J1JK10 structural maintenance of chromosomes protein 6B-like isoform X1

4.3e-138

57.04

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVTDHRDSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L+   R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

A0A6J1JP47 structural maintenance of chromosomes protein 6B-like isoform X2

4.3e-138

57.04

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + +++    IDVENPCVIMSQDKSREFLHSGNDKDK    FKATLLQQV+DLLKNIF QLRSANALVDDLESTIRPVEK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D   L   +                    G  EKLRERFIEKKAQIASMMEKTSEVRR+KDELQETLSLATREKLGLEEEHG
Subjt:  ---------------YPLDFIYLFSFI-------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
        RKMNYIQ M KRVRLLEQQVHD+ EQH+RNTQAEESEIEEKLKELE E+EA KSTVM                                           
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                    RLLNAFIVTDHRDSL+LRGCANEANY+ LP+IIYDFSRPL
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQ     + +  +  Y    F    V+TILPPV+RPRSGRLCSSF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED
        DQIKSLEKD S++KEEAEQCRKRKRAAEEQL+ LEE L+   R+C++
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLA---RQCED

SwissProt top hits

e value

%identity

Alignment

Q9FII7 Structural maintenance of chromosomes protein 6B

3.5e-81

39.07

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Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + ++++   IDVENPCV+MSQDKSREFLHSGNDKDK    FKATLLQQVNDLL++I++ L  A A+VD+LE+TI+P+EK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLD---------FIYLFSFIS----------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D          + L   I           G VE LR+   +KKAQ+A +M++++ ++R  +   ++   A REK+ L+EE  
Subjt:  ---------------YPLD---------FIYLFSFIS----------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVMR------------------------------------------
         K NY+Q +  RVR LE+QV DI EQ M+NTQAE+SEIEEKLK LE E E  ++   R                                          
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVMR------------------------------------------

Query:  -------------------------------------------------------------LLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                     LLNAFIVTDH+DSL LRGCANEANY+ L +IIYDFSRP 
Subjt:  -------------------------------------------------------------LLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQ--YIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSS
        L+IP HM+PQT+HPT  SVI S+N TV+NVL+D+   ERQVL ++Y+ GK+VAF +     +  Y +  Y   F G     V+T LPP+ R R  RLC+S
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQ--YIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSS

Query:  FGDQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKL
        F DQIK LE +AS  + E  QC +RKR AEE L++LE K+
Subjt:  FGDQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKL

Q9FLR5 Structural maintenance of chromosomes protein 6A

1.8e-72

36.48

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Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKYPLDFI-------------
        E + ++++   IDVENPCVIMSQDKSREFLHSGNDKDKF    KATLLQQV+D+L++I  +L SANAL+D++E TI+P+EK   + +             
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKYPLDFI-------------

Query:  ---------YLFSFI-------------------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                   +S++                                G VE LR    EKKAQ+A ++++++ ++R  + L++++  A REK+ LEEE+ 
Subjt:  ---------YLFSFI-------------------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
         K + IQ +  RVR LE+Q+ DI E  +R+TQ E+SEIE KL +L  E E  +S V                                            
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                     LLNAFIVTDH+D + LR C  EA Y  L +IIYDFSRP 
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIP HM+PQT+HPT LSV+HSEN TV+NVL+D    ER VL ++Y+VGK +AF++     + +  I  Y    F    V+T LPP R  R  RLC+SF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLAR
        DQIK LE +AS  + E ++CR +KR AE  L+ LE  + R
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLAR

Arabidopsis top hits

e value

%identity

Alignment

AT5G07660.1 structural maintenance of chromosomes 6A

1.2e-73

36.48

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKYPLDFI-------------
        E + ++++   IDVENPCVIMSQDKSREFLHSGNDKDKF    KATLLQQV+D+L++I  +L SANAL+D++E TI+P+EK   + +             
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDKF----KATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKYPLDFI-------------

Query:  ---------YLFSFI-------------------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                   +S++                                G VE LR    EKKAQ+A ++++++ ++R  + L++++  A REK+ LEEE+ 
Subjt:  ---------YLFSFI-------------------------------SGTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------
         K + IQ +  RVR LE+Q+ DI E  +R+TQ E+SEIE KL +L  E E  +S V                                            
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVM-------------------------------------------

Query:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                     LLNAFIVTDH+D + LR C  EA Y  L +IIYDFSRP 
Subjt:  ------------------------------------------------------------RLLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG
        LDIP HM+PQT+HPT LSV+HSEN TV+NVL+D    ER VL ++Y+VGK +AF++     + +  I  Y    F    V+T LPP R  R  RLC+SF 
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSSFG

Query:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLAR
        DQIK LE +AS  + E ++CR +KR AE  L+ LE  + R
Subjt:  DQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLAR

AT5G61460.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.5e-82

39.07

Show/hide

Query:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------
        + + ++++   IDVENPCV+MSQDKSREFLHSGNDKDK    FKATLLQQVNDLL++I++ L  A A+VD+LE+TI+P+EK                   
Subjt:  ESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDK----FKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEK-------------------

Query:  ---------------YPLD---------FIYLFSFIS----------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG
                       Y +D          + L   I           G VE LR+   +KKAQ+A +M++++ ++R  +   ++   A REK+ L+EE  
Subjt:  ---------------YPLD---------FIYLFSFIS----------GTVEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHG

Query:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVMR------------------------------------------
         K NY+Q +  RVR LE+QV DI EQ M+NTQAE+SEIEEKLK LE E E  ++   R                                          
Subjt:  RKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVMR------------------------------------------

Query:  -------------------------------------------------------------LLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL
                                                                     LLNAFIVTDH+DSL LRGCANEANY+ L +IIYDFSRP 
Subjt:  -------------------------------------------------------------LLNAFIVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPL

Query:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQ--YIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSS
        L+IP HM+PQT+HPT  SVI S+N TV+NVL+D+   ERQVL ++Y+ GK+VAF +     +  Y +  Y   F G     V+T LPP+ R R  RLC+S
Subjt:  LDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQ--YIIKIYHYLFIGFVGCCVETILPPVRRPRSGRLCSS

Query:  FGDQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKL
        F DQIK LE +AS  + E  QC +RKR AEE L++LE K+
Subjt:  FGDQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGCAAAGAAGTTGATTTGTCGGAAGCCGGCCTCATTTCGGAGTCGATCGTGAAGATGATCAAAGACGAACAGATAGATGTTGAGAACCCATGTGTAATAATGAGTCA
GGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGGCTACTCTGCTTCAACAAGTTAATGATCTGTTGAAAAACATTTTTGATCAATTGAGAT
CTGCAAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGTATCCATTGGACTTTATCTATTTGTTTTCTTTCATATCAGGGACAGTTGAAAAATTA
AGAGAACGCTTTATTGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAG
AGAGAAACTTGGACTTGAGGAGGAGCATGGCCGAAAAATGAACTACATCCAAAGTATGGTAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCATGATATTCAAGAGCAGC
ACATGAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGTCTGAAGCTGGAAAGTCAACAGTTATGAGGTTGCTCAATGCTTTC
ATTGTGACCGATCATCGAGATTCTCTTGTTTTGAGAGGATGTGCAAACGAAGCTAACTATAAGTACCTCCCAGTTATCATCTATGACTTTTCAAGACCACTGTTAGATAT
TCCTGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTAATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGC
AAGTGCTCGTTAAAGATTATGATGTAGGTAAATCAGTTGCATTTGACCAAGAAAGTCCTCTTTTTCAGTATATTATCAAGATTTATCATTATTTGTTTATAGGTTTTGTC
GGTTGTTGTGTTGAGACAATTCTTCCCCCAGTTAGAAGACCTAGAAGTGGTAGACTCTGCAGTTCTTTTGGTGACCAAATTAAAAGTCTCGAAAAAGATGCATCGAGTGT
AAAAGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCCAGGATCTTGAAGAGAAGCTAGCTAGGCAATGTGAAGATGGGAGGCTTAATGTGA
TTTGTTTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGKEVDLSEAGLISESIVKMIKDEQIDVENPCVIMSQDKSREFLHSGNDKDKFKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKYPLDFIYLFSFISGTVEKL
RERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESESEAGKSTVMRLLNAF
IVTDHRDSLVLRGCANEANYKYLPVIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQESPLFQYIIKIYHYLFIGFV
GCCVETILPPVRRPRSGRLCSSFGDQIKSLEKDASSVKEEAEQCRKRKRAAEEQLQDLEEKLARQCEDGRLNVICL

Lag0019877 (gene) of Sponge gourd (AG-4) v1 genome