; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019883 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019883
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:46378319..46378975
RNA-Seq ExpressionLag0019883
SyntenyLag0019883
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.8e-4347.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW+ TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-4247.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW  TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-4246.93Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P T   + LGGNP S+ FW N  D+I +KL +W+Y++ISKGGRLTLIK+TLS +P Y LS+F+AP S   +I+K+ R+FLW G        L+NW +V 
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
         P E GGLG+ + ++TN A   KWLWR++ E  SLW+R+I  KY     G LP+    +SS+APW SI+     F+  Q
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-4247.49Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P T   + LGGNP S  FW N  D+I +KL +W+Y++ISKGGRLTLIK+TLS +P Y LS+F+A  S   +I+K+ R+FLW G   S    L+NW +V 
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
         P E GGLG+ + +ITN A   KWLWR++ E  SLW+R+I  KY     G LP+    +SS+APW SI+     F++ Q
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-4247.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW  TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.4e-4247.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW  TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein4.7e-4347.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW+ TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.8e-4246.93Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P T   + LGGNP S+ FW N  D+I +KL +W+Y++ISKGGRLTLIK+TLS +P Y LS+F+AP S   +I+K+ R+FLW G        L+NW +V 
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
         P E GGLG+ + ++TN A   KWLWR++ E  SLW+R+I  KY     G LP+    +SS+APW SI+     F+  Q
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein1.8e-4247.49Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P T   + LGGNP S  FW N  D+I +KL +W+Y++ISKGGRLTLIK+TLS +P Y LS+F+A  S   +I+K+ R+FLW G   S    L+NW +V 
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
         P E GGLG+ + +ITN A   KWLWR++ E  SLW+R+I  KY     G LP+    +SS+APW SI+     F++ Q
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQ
A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein1.4e-4247.73Show/hide
Query:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA
        +P     + LGGNP S  FW  TI+ IH+KL+ W+YS ISKGGRLTL+KA+LS +P Y LS F+AP SV   I+K  R FLW G +   +  L+NW +  
Subjt:  IPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVA

Query:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
        +P E+GGLG+ K + TN A   KWLWR+ +E  SLWK+ I AKY+ + QG +P   R +S+ +PW +I K    +E
Subjt:  APIEVGGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFE
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.7e-1836.36Show/hide
Query:  IDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVAAPIEVGGLGLFKTRITNSAFQVK
        ++++  ++  WR   +S  GRLTL KA LS MP + +S    PQS+   +D++ R+FLW    +     LV W  V +P + GGLG+   +  N A   K
Subjt:  IDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVAAPIEVGGLGLFKTRITNSAFQVK

Query:  WLWRFFHEETSLWKRVISAKY
          WR   E+ SLW  V+  KY
Subjt:  WLWRFFHEETSLWKRVISAKY
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAATGGCCCAATTCCCCATACCTTATCTAGGCTCTCCCTTGGGGGTAATCCGTCATCGTCTCCTTTCTGGGCTAATACGATTGATAAGATTCATCGTAAATTGGA
TAGTTGGCGCTATTCCTATATTTCAAAGGGAGGTAGATTAACTTTGATTAAAGCAACTTTAAGTGGCATGCCCAACTACTTGTTATCTATCTTTAGAGCTCCGCAATCGG
TTTGCTTTAGTATAGATAAGATTATCAGATCTTTTCTTTGGCATGGGCAAGATCAAAGTAGTAGCATCCCTTTGGTTAACTGGGGCGTGGTGGCTGCGCCTATAGAGGTT
GGGGGTTTGGGCTTATTCAAGACTAGAATTACAAATAGCGCATTTCAGGTCAAATGGCTTTGGAGATTCTTTCATGAGGAGACTTCTCTGTGGAAGCGAGTCATCTCAGC
AAAATATTCTACCCATAGACAAGGAGCTCTTCCAACTCGAGCGCGATTCACTTCCTCTCGAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCGAGAAAATAC
AGTTTGGAATCTTAAGGATGGCAGTAAAATCTCTTTTTGGCATGACTCTTGGACAGATCATGGGCCATTATATCAAGCCATCCCTCGCCTTTTGCGTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAATGGCCCAATTCCCCATACCTTATCTAGGCTCTCCCTTGGGGGTAATCCGTCATCGTCTCCTTTCTGGGCTAATACGATTGATAAGATTCATCGTAAATTGGA
TAGTTGGCGCTATTCCTATATTTCAAAGGGAGGTAGATTAACTTTGATTAAAGCAACTTTAAGTGGCATGCCCAACTACTTGTTATCTATCTTTAGAGCTCCGCAATCGG
TTTGCTTTAGTATAGATAAGATTATCAGATCTTTTCTTTGGCATGGGCAAGATCAAAGTAGTAGCATCCCTTTGGTTAACTGGGGCGTGGTGGCTGCGCCTATAGAGGTT
GGGGGTTTGGGCTTATTCAAGACTAGAATTACAAATAGCGCATTTCAGGTCAAATGGCTTTGGAGATTCTTTCATGAGGAGACTTCTCTGTGGAAGCGAGTCATCTCAGC
AAAATATTCTACCCATAGACAAGGAGCTCTTCCAACTCGAGCGCGATTCACTTCCTCTCGAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCGAGAAAATAC
AGTTTGGAATCTTAAGGATGGCAGTAAAATCTCTTTTTGGCATGACTCTTGGACAGATCATGGGCCATTATATCAAGCCATCCCTCGCCTTTTGCGTTGTCCAGTAG
Protein sequenceShow/hide protein sequence
MPNGPIPHTLSRLSLGGNPSSSPFWANTIDKIHRKLDSWRYSYISKGGRLTLIKATLSGMPNYLLSIFRAPQSVCFSIDKIIRSFLWHGQDQSSSIPLVNWGVVAAPIEV
GGLGLFKTRITNSAFQVKWLWRFFHEETSLWKRVISAKYSTHRQGALPTRARFTSSRAPWTSILKQASLFEKIQFGILRMAVKSLFGMTLGQIMGHYIKPSLAFCVVQ