; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019899 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019899
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:46544344..46545493
RNA-Seq ExpressionLag0019899
SyntenyLag0019899
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E     +   S        G+D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR+   HL+S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-3934.43Show/hide
Query:  FAIPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQS
        F  PRL+ALST K+ ++ + W+ +   W L PR+ L + E     +   S        G D   W  +S   ++VAS ++    ++          QSQ+
Subjt:  FAIPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQS

Query:  TVFSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWR--AFHLASGINMPIPGQVDWICLEVFAV
        T F NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR  + HL S +N   P     +C+ + + 
Subjt:  TVFSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWR--AFHLASGINMPIPGQVDWICLEVFAV

Query:  KANSQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        K  +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  KANSQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.0e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E+    +   S        G D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +        PS C++C    +   H+F+ C +A  IWR    HL S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-3833.58Show/hide
Query:  IPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTV
        IPRLYALS  ++ TV E WDQ +  W + PR+PL +RE +  +    S P    + G     W P    +++VASA+      ++   S      +    
Subjt:  IPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTV

Query:  FSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAFHLASGINMPIPGQVDWICLEVFAVKANS
          +LW++ IP+K +FFIWT++++ LNT D +Q+   S SL+PS C+ C   ++ ++H+F+ C  A  +W  +   +G  M +   V  +CL++      +
Subjt:  FSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAFHLASGINMPIPGQVDWICLEVFAVKANS

Query:  QREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKA
         + I       A LW  W +RN   F D   S  N WEDI +L   W SK+K   +Y  ++IALN KA
Subjt:  QREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKA

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]3.9e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E     +   S        G+D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR+   HL+S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.9e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E     +   S        G+D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR+   HL+S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.1e-3934.43Show/hide
Query:  FAIPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQS
        F  PRL+ALST K+ ++ + W+ +   W L PR+ L + E     +   S        G D   W  +S   ++VAS ++    ++          QSQ+
Subjt:  FAIPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQS

Query:  TVFSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWR--AFHLASGINMPIPGQVDWICLEVFAV
        T F NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR  + HL S +N   P     +C+ + + 
Subjt:  TVFSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWR--AFHLASGINMPIPGQVDWICLEVFAV

Query:  KANSQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        K  +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  KANSQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.7e-3833.58Show/hide
Query:  IPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTV
        IPRLYALS  ++ TV E WDQ +  W + PR+PL +RE +  +    S P    + G     W P    +++VASA+      ++   S      +    
Subjt:  IPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTV

Query:  FSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAFHLASGINMPIPGQVDWICLEVFAVKANS
          +LW++ IP+K +FFIWT++++ LNT D +Q+   S SL+PS C+ C   ++ ++H+F+ C  A  +W  +   +G  M +   V  +CL++      +
Subjt:  FSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAFHLASGINMPIPGQVDWICLEVFAVKANS

Query:  QREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKA
         + I       A LW  W +RN   F D   S  N WEDI +L   W SK+K   +Y  ++IALN KA
Subjt:  QREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKA

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein2.4e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E+    +   S        G D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +        PS C++C    +   H+F+ C +A  IWR    HL S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.9e-4034.81Show/hide
Query:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF
        PRLYALST K  ++ + W+ +   W L PR+ L + E     +   S        G+D   W  +S   ++VAS ++    ++          QSQ+T F
Subjt:  PRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIPDSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVF

Query:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN
         NLWK  IPKK  FFIWT++Y  +NT + L +   +    PS C++C    +   H+F+ C +A  IWR+   HL+S +N   P +   +C+ + + K  
Subjt:  SNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAF--HLASGINMPIPGQVDWICLEVFAVKAN

Query:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF
        +++ + +   +A+ LW  W +RN R F    ++   IWEDI +LA  W S++  FS+YQASSIALN  AF
Subjt:  SQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACGAGAGCTTTCCTTGCTTGGAAGATGGTCTTCTTTGCTTTGCTTCTTCTCGCTTTTTGCATTTTTGCAAACAACCTTGTTGCGACCAATGTGGTGCCTCA
TGTAACTCAAAGGAGTCTATTTGCGATCCCTCGCCTTTATGCGCTGTCCACCAGGAAAAATATGACAGTCTCCGAAGCATGGGACCAATCCGCTGCTTCATGGAAGCTTT
ATCCCAGGCAACCCTTGTTTGATAGGGAGATTCGTGCTCAAGAGGATCGAGCTGCCTCTTTCCCAATCCCTGCTTTATCGGGTGGGTCGGACTATATGTTTTGGATCCCA
GACTCGAAGAGCCGTTTCTCTGTTGCTTCTGCTAGACGTTTCTTCTGCAATTCAGTATCGGCGAATCGATCACAATCTCATCACTCACAATCTCAATCCACAGTTTTCTC
CAATTTGTGGAAGGCTTTGATTCCCAAAAAAATCGAGTTCTTCATTTGGACCGTTATATACAGAGGGTTGAATACAACAGACATGCTTCAACGAATTTTCAAATCAACTT
CTCTAAGCCCGAGCTGTTGTCTCCTTTGCCATGTTGGCTCGGATGCACTGGATCACATCTTTGTCCATTGTAAAGTTGCTTCCGACATTTGGCGCGCCTTCCATCTAGCC
TCTGGTATTAATATGCCAATCCCCGGTCAAGTTGATTGGATATGCTTAGAGGTTTTTGCTGTCAAAGCTAACTCCCAGAGAGAGATTCATATCCAGACCATGTTTGCAGC
AATTTTATGGGTTTTTTGGGGCAAGCGTAATAGGCGGACTTTTAAGGACAATTATAGGTCGAGCTGCAATATTTGGGAAGACATCGTTTCTCTTGCATCCTTTTGGGTCT
CCAAAGCAAAAGCGTTTTCCGATTATCAGGCTTCATCTATTGCCTTAAATTGGAAAGCTTTTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACGAGAGCTTTCCTTGCTTGGAAGATGGTCTTCTTTGCTTTGCTTCTTCTCGCTTTTTGCATTTTTGCAAACAACCTTGTTGCGACCAATGTGGTGCCTCA
TGTAACTCAAAGGAGTCTATTTGCGATCCCTCGCCTTTATGCGCTGTCCACCAGGAAAAATATGACAGTCTCCGAAGCATGGGACCAATCCGCTGCTTCATGGAAGCTTT
ATCCCAGGCAACCCTTGTTTGATAGGGAGATTCGTGCTCAAGAGGATCGAGCTGCCTCTTTCCCAATCCCTGCTTTATCGGGTGGGTCGGACTATATGTTTTGGATCCCA
GACTCGAAGAGCCGTTTCTCTGTTGCTTCTGCTAGACGTTTCTTCTGCAATTCAGTATCGGCGAATCGATCACAATCTCATCACTCACAATCTCAATCCACAGTTTTCTC
CAATTTGTGGAAGGCTTTGATTCCCAAAAAAATCGAGTTCTTCATTTGGACCGTTATATACAGAGGGTTGAATACAACAGACATGCTTCAACGAATTTTCAAATCAACTT
CTCTAAGCCCGAGCTGTTGTCTCCTTTGCCATGTTGGCTCGGATGCACTGGATCACATCTTTGTCCATTGTAAAGTTGCTTCCGACATTTGGCGCGCCTTCCATCTAGCC
TCTGGTATTAATATGCCAATCCCCGGTCAAGTTGATTGGATATGCTTAGAGGTTTTTGCTGTCAAAGCTAACTCCCAGAGAGAGATTCATATCCAGACCATGTTTGCAGC
AATTTTATGGGTTTTTTGGGGCAAGCGTAATAGGCGGACTTTTAAGGACAATTATAGGTCGAGCTGCAATATTTGGGAAGACATCGTTTCTCTTGCATCCTTTTGGGTCT
CCAAAGCAAAAGCGTTTTCCGATTATCAGGCTTCATCTATTGCCTTAAATTGGAAAGCTTTTCTGTGA
Protein sequenceShow/hide protein sequence
MASTRAFLAWKMVFFALLLLAFCIFANNLVATNVVPHVTQRSLFAIPRLYALSTRKNMTVSEAWDQSAASWKLYPRQPLFDREIRAQEDRAASFPIPALSGGSDYMFWIP
DSKSRFSVASARRFFCNSVSANRSQSHHSQSQSTVFSNLWKALIPKKIEFFIWTVIYRGLNTTDMLQRIFKSTSLSPSCCLLCHVGSDALDHIFVHCKVASDIWRAFHLA
SGINMPIPGQVDWICLEVFAVKANSQREIHIQTMFAAILWVFWGKRNRRTFKDNYRSSCNIWEDIVSLASFWVSKAKAFSDYQASSIALNWKAFL