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Lag0019900 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019900
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:46558676..46559296
RNA-Seq ExpressionLag0019900
SyntenyLag0019900
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV89685.1 RVT_3 domain-containing protein, partial [Cephalotus follicularis]1.1e-1636.24Show/hide
Query:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL
        W PP     K+N D AV++N N    G VVR+ +G V+L +   V+ + D   +EAM +   L   +E G+ +++ ESD+ +V+ +I++ Q +LS  G +
Subjt:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL

Query:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSL
        VEEI+S+ S   FC   W  +  NK+AHE+AR A        W+E   L
Subjt:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSL

XP_023876296.1 uncharacterized protein LOC111988743 [Quercus suber]3.3e-1636.91Show/hide
Query:  SKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEM
        + +W  P  P YKLN D A+ K LN S IGA++RN +GEVM         V D E  E +  R+ +   ++AGFS+++ E D+A+V+  +S    +LS +
Subjt:  SKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEM

Query:  GFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE
        G +V++++ +A+ LR+ S     R  N +AH +AR A     +  WLEE
Subjt:  GFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]3.3e-1634.81Show/hide
Query:  VWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGF
        VW PPA P +K+N D A+  +  RS  GAV+RN+ GEVM     +   V   +  E +  R+ +   V+AGF++++ E DS +V+K +SS+  +LS +G 
Subjt:  VWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGF

Query:  LVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEV-SLAVEGCYL
        +V +I+ + S LR  S  W  R  N++AH +A+ A   + +  W+E+   +A++  +L
Subjt:  LVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEV-SLAVEGCYL

XP_030963892.1 uncharacterized protein LOC115985062 [Quercus lobata]5.1e-1732.77Show/hide
Query:  GDRFLIIYPISRPFNAGRVELLGGGDSESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEA
        G  FL+ Y  ++     ++ELL     +S  W PP   +YKLN D A+  +L  S +GA++RN+RGEVM        FV D E  E +  R+ L   ++ 
Subjt:  GDRFLIIYPISRPFNAGRVELLGGGDSESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEA

Query:  GFSQVMAESDSASVVKQISSTQRNLSEMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE
        G S ++ E D+ SV++ ++S   + S +G ++E+I  +   LR+ S+    R+ N +AH ++R A     E  W+E+
Subjt:  GFSQVMAESDSASVVKQISSTQRNLSEMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE

XP_030963999.1 uncharacterized protein LOC115985177 [Quercus lobata]7.4e-1638.51Show/hide
Query:  KVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMG
        ++W PP    YK+N DV V   +N S IG VVRNKRGEVM++       + D E  E +  ++ L  VV+A F+ ++ E D+ SV+K I+S + N S +G
Subjt:  KVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMG

Query:  FLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE
         + E+I  IA   R  S+ +   + N +AH +A+ A     E  WLEE
Subjt:  FLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE

TrEMBL top hitse value%identityAlignment
A0A1Q3CFW0 RVT_3 domain-containing protein (Fragment)1.3e-1335.77Show/hide
Query:  SKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEM
        S  W  P+    K+N D AV++N N      VVR+ +G V+L + R V+ + D   +EA+ +   L   +E G+ +++ ESD  +V+ +I+++Q +LS  
Subjt:  SKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEM

Query:  GFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTA
        G ++EEI+SI S   FC   W  R  NK+AH++A+ A
Subjt:  GFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTA

A0A1Q3DB78 RVT_3 domain-containing protein (Fragment)5.5e-1736.24Show/hide
Query:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL
        W PP     K+N D AV++N N    G VVR+ +G V+L +   V+ + D   +EAM +   L   +E G+ +++ ESD+ +V+ +I++ Q +LS  G +
Subjt:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL

Query:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSL
        VEEI+S+ S   FC   W  +  NK+AHE+AR A        W+E   L
Subjt:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSL

A0A2N9HRK6 Uncharacterized protein1.5e-1432.52Show/hide
Query:  SESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLS
        +++  W PP+  N+K N D A+ K  N + IG +VRN+ G+VM +  + V +   VE +EA   R  +  V E G S+   E DS +VV  ++S   NL+
Subjt:  SESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLS

Query:  EMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSLAVEGCYLAE
          G L+E+++ + + L         R  N +AH +AR A+       W+E+V    +  YL+E
Subjt:  EMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSLAVEGCYLAE

A0A7N2LST3 RNase H domain-containing protein1.5e-1436.6Show/hide
Query:  GDSESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRN
        G  + + W PP   +YK+N D AV   +N S  G VVRN+R EVM +       V D E  + +  R+ L   V+AGF  V+ E DS +V++ IS+ + N
Subjt:  GDSESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRN

Query:  LSEMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE
         S +G + E+I+ +A+  R  S+ +  R+ N +AH +A  A     E  WLEE
Subjt:  LSEMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE

A0A7N2RFA1 Uncharacterized protein7.5e-1433.95Show/hide
Query:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL
        W PP    +KLN D A+  +L  S IGA++RN+RGEVM         V+D    E +  R  L   ++ GFS+++ E DSA V+  + ST  NLS +G +
Subjt:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL

Query:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE-VSLAVEGCYLAELRS
         ++I+ + + L +  +    R  N   H +AR A     +  WLE+    A+E  Y+  L+S
Subjt:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEE-VSLAVEGCYLAELRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.8e-0527.41Show/hide
Query:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL
        W PP     K NTD   N++  R  IG V+RN++GEV     R +  +  V   E   +R  ++++    ++ V+ ESDS  V+ +I +       +   
Subjt:  WNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAESDSASVVKQISSTQRNLSEMGFL

Query:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTAL
        +++++ + S+       +  R  N LA  VAR +L
Subjt:  VEEIRSIASRLRFCSIGWCCRARNKLAHEVARTAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGCGATAGGTTTCTGATTATCTATCCCATTTCAAGGCCTTTCAACGCAGGAAGGGTGGAGCTGTTGGGAGGGGGTGATTCTGAATCTAAGGTTTGGAACCCACC
TGCGTTTCCTAATTACAAATTAAATACAGATGTGGCAGTGAACAAGAATCTCAATCGCAGCAGTATTGGTGCAGTTGTCAGAAACAAAAGAGGGGAAGTGATGCTTACCT
CCGAGAGGTTGGTTGATTTTGTGATTGATGTGGAGGTATTGGAGGCGATGGAGGTTCGCGAAGGACTGGTTGCAGTGGTTGAAGCTGGCTTCTCGCAGGTGATGGCAGAA
TCAGATTCGGCAAGTGTGGTGAAGCAGATCAGTTCGACGCAGAGAAACCTCTCGGAGATGGGTTTTCTGGTTGAGGAAATTAGGAGCATTGCCAGCAGGTTGAGGTTTTG
CTCGATCGGCTGGTGCTGTCGAGCTAGAAATAAGCTAGCGCACGAGGTAGCAAGGACAGCGTTAAGGCAGCAGCTGGAAGGAACTTGGCTGGAGGAGGTGTCGTTGGCTG
TCGAAGGTTGCTACTTGGCTGAGTTGAGGAGCGCTGATGCGGATTCTAGGGCTTTATGTAATGAGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGGCGATAGGTTTCTGATTATCTATCCCATTTCAAGGCCTTTCAACGCAGGAAGGGTGGAGCTGTTGGGAGGGGGTGATTCTGAATCTAAGGTTTGGAACCCACC
TGCGTTTCCTAATTACAAATTAAATACAGATGTGGCAGTGAACAAGAATCTCAATCGCAGCAGTATTGGTGCAGTTGTCAGAAACAAAAGAGGGGAAGTGATGCTTACCT
CCGAGAGGTTGGTTGATTTTGTGATTGATGTGGAGGTATTGGAGGCGATGGAGGTTCGCGAAGGACTGGTTGCAGTGGTTGAAGCTGGCTTCTCGCAGGTGATGGCAGAA
TCAGATTCGGCAAGTGTGGTGAAGCAGATCAGTTCGACGCAGAGAAACCTCTCGGAGATGGGTTTTCTGGTTGAGGAAATTAGGAGCATTGCCAGCAGGTTGAGGTTTTG
CTCGATCGGCTGGTGCTGTCGAGCTAGAAATAAGCTAGCGCACGAGGTAGCAAGGACAGCGTTAAGGCAGCAGCTGGAAGGAACTTGGCTGGAGGAGGTGTCGTTGGCTG
TCGAAGGTTGCTACTTGGCTGAGTTGAGGAGCGCTGATGCGGATTCTAGGGCTTTATGTAATGAGTTTTAG
Protein sequenceShow/hide protein sequence
MNGDRFLIIYPISRPFNAGRVELLGGGDSESKVWNPPAFPNYKLNTDVAVNKNLNRSSIGAVVRNKRGEVMLTSERLVDFVIDVEVLEAMEVREGLVAVVEAGFSQVMAE
SDSASVVKQISSTQRNLSEMGFLVEEIRSIASRLRFCSIGWCCRARNKLAHEVARTALRQQLEGTWLEEVSLAVEGCYLAELRSADADSRALCNEF