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Lag0019928 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019928
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S20
Genome locationchr5:46776654..46777758
RNA-Seq ExpressionLag0019928
SyntenyLag0019928
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8006393.1 hypothetical protein BT93_K0636 [Corymbia citriodora subsp. variegata]1.7e-5796.67Show/hide
Query:  MAYAMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        MAYAMKPTKPGLE+SQEQIHKIRITLSSKNVKNLEKVC+DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS +VV
Subjt:  MAYAMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

KAG6600158.1 Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]2.7e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_008467267.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]1.3e-5798.35Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_038711947.1 40S ribosomal protein S20-2-like [Tripterygium wilfordii]2.7e-5898.33Show/hide
Query:  MAYAMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        MAYAMKPTKPGLE+SQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  MAYAMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

TrEMBL top hitse value%identityAlignment
A0A1S3AXJ9 40S ribosomal protein S20-2-like1.3e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A1S4E624 40S ribosomal protein S20-26.5e-5898.35Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A5A7VKH9 40S ribosomal protein S20-2-like1.3e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1FSX5 40S ribosomal protein S20-2-like1.3e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1IAH1 40S ribosomal protein S20-2-like1.3e-5898.36Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLED+QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

SwissProt top hitse value%identityAlignment
P23403 40S ribosomal protein S204.8e-4274.77Show/hide
Query:  DSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
        D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVE
Subjt:  DSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE

Query:  VEVTIAD
        VEVTIAD
Subjt:  VEVTIAD

P35686 40S ribosomal protein S204.3e-5184.55Show/hide
Query:  MAYA--MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MK  K G E SQE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA--MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIADQ
        VVKQITSITIEPGVEVEVTI+DQ
Subjt:  VVKQITSITIEPGVEVEVTIADQ

P49200 40S ribosomal protein S20-19.3e-5492.24Show/hide
Query:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT
        MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQIT
Subjt:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT

Query:  SITIEPGVEVEVTIAD
        SITIEPGVEVEVTIAD
Subjt:  SITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S208.2e-4270.09Show/hide
Query:  AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-21.4e-5491.74Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein6.6e-5592.24Show/hide
Query:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT
        MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQIT
Subjt:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT

Query:  SITIEPGVEVEVTIAD
        SITIEPGVEVEVTIAD
Subjt:  SITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein1.0e-5591.74Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein1.0e-5591.74Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein1.0e-5591.74Show/hide
Query:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAY-AMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein6.6e-5592.24Show/hide
Query:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT
        MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQIT
Subjt:  MKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQIT

Query:  SITIEPGVEVEVTIAD
        SITIEPGVEVEVTIAD
Subjt:  SITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTACGCAATGAAACCGACTAAGCCAGGATTAGAAGATTCGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTTGAGAAAGT
TTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACTAAGGTTCTTCACATTACAACCAGAAAATCTCCATGTGGTG
AAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCT
GGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTACGCAATGAAACCGACTAAGCCAGGATTAGAAGATTCGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTTGAGAAAGT
TTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACTAAGGTTCTTCACATTACAACCAGAAAATCTCCATGTGGTG
AAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCT
GGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA
Protein sequenceShow/hide protein sequence
MAYAMKPTKPGLEDSQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEP
GVEVEVTIADQ