CuGenDBv2

Gene ID	Lag0019980
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	TraB domain-containing protein
Genome location	chr5:47152635..47153093
RNA-Seq Expression	Lag0019980
Synteny	Lag0019980
Gene Ontology terms	NA
InterPro domains	IPR002816 - TraB/PrgY/GumN family

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8650450.1 hypothetical protein Csa_011235 [Cucumis sativus]

1.2e-60

83.33

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVK RSFFLSS S S SL+SSMEALKS AIPIF+  P+S PTKSLKP  VSI PPPS FDFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEP+AIWL+GTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

XP_004140793.1 traB domain-containing protein isoform X1 [Cucumis sativus]

1.2e-60

83.33

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVK RSFFLSS S S SL+SSMEALKS AIPIF+  P+S PTKSLKP  VSI PPPS FDFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEP+AIWL+GTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

XP_022945049.1 traB domain-containing protein isoform X1 [Cucurbita moschata]

1.0e-59

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVKA  FFLSS        SSME+LKS  IPIFRPYP SI TKS+KP KVSIRPPPS FDFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEPEAIWL+ TSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

XP_022968022.1 traB domain-containing protein isoform X1 [Cucurbita maxima]

1.0e-62

86.67

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVKA  FFLSS        SSMEALKS AIPIFRPYPVSIPTKS+KPTKVSIRPPPS FDFR+E+SRDSRAAI EAHPELLDL DDGTLVLVEKRRFGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEPEAIWL+ TSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

XP_023542003.1 traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo]

7.3e-61

85.33

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVKA  FFLSS        SSMEALKS AIPIFRPYP SI TKS+KP KVSIRPPPS FDFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEPEAIWL+ TSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8K8 Uncharacterized protein

8.4e-55

84.62

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Query:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI
        MEALKS AIPIF+  P+S PTKSLKP  VSI PPPS FDFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGPVPAWR+EFVEP+AIWL+GTSHI
Subjt:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI

Query:  SPKSVKDVERVVRAVKPDNVVVELCRSRQV
        SPKSVKDVERVVRAVKPDNVVVELCRSRQV
Subjt:  SPKSVKDVERVVRAVKPDNVVVELCRSRQV

A0A6J1CGK3 traB domain-containing protein isoform X1

1.7e-52

82.03

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Query:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI
        MEAL S  IPIF+PYP+    +SLKP KVSI PPP GFDFR EIS DSRAAI ++HPELLDLADDGTLVL+EKRRFGPVPAWR+EFVEPEAIWL+GTSHI
Subjt:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI

Query:  SPKSVKDVERVVRAVKPDNVVVELCRSR
        SPKSV+DV+RVVRAVKPDNVVVELCRSR
Subjt:  SPKSVKDVERVVRAVKPDNVVVELCRSR

A0A6J1CHI0 traB domain-containing protein isoform X2

1.7e-52

82.03

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Query:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI
        MEAL S  IPIF+PYP+    +SLKP KVSI PPP GFDFR EIS DSRAAI ++HPELLDLADDGTLVL+EKRRFGPVPAWR+EFVEPEAIWL+GTSHI
Subjt:  MEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHI

Query:  SPKSVKDVERVVRAVKPDNVVVELCRSR
        SPKSV+DV+RVVRAVKPDNVVVELCRSR
Subjt:  SPKSVKDVERVVRAVKPDNVVVELCRSR

A0A6J1FZW1 traB domain-containing protein isoform X1

5.1e-60

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVKA  FFLSS        SSME+LKS  IPIFRPYP SI TKS+KP KVSIRPPPS FDFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEPEAIWL+ TSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

A0A6J1HSC9 traB domain-containing protein isoform X1

4.9e-63

86.67

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Query:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP
        MAVKA  FFLSS        SSMEALKS AIPIFRPYPVSIPTKS+KPTKVSIRPPPS FDFR+E+SRDSRAAI EAHPELLDL DDGTLVLVEKRRFGP
Subjt:  MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGP

Query:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        VPAWR+EFVEPEAIWL+ TSHISPKSVKDVERVVRAVKPDNVVVELCRSR
Subjt:  VPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

SwissProt top hits

e value

%identity

Alignment

Q58DF3 TraB domain-containing protein

2.9e-04

34.94

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Query:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        ++   P+ L   D   L+L   +++RR  P +P   +E V  +   ++++GT+H S  S +DV + +R V+PD VVVELC+ R
Subjt:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

Q99JY4 TraB domain-containing protein

8.5e-04

32.53

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Query:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        ++   P+ +   D   L+L   +++RR  P +P   ++ V  +   ++++GT+H S  S +DV + +R V+PD VVVELC+ R
Subjt:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

Q9H4I3 TraB domain-containing protein

3.8e-04

33.73

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Query:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        ++   P+ L   D   L+L   +++RR  P +P   ++ V  +   ++++GT+H S  S +DV + +R V+PD VVVELC+ R
Subjt:  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

Arabidopsis top hits

e value

%identity

Alignment

AT1G05270.1 TraB family protein

5.1e-04

45.95

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Query:  IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        ++L+GT+H+S +S  +VE ++  +KP+ V VELC SR
Subjt:  IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

AT2G32340.1 TraB family protein

1.0e-04

48.65

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Query:  IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR
        ++L+GT+H+S +S ++VE V+ A+KP  V +ELC SR
Subjt:  IWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSR

AT5G52030.2 TraB family protein

1.7e-39

64.46

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Query:  PIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHISPKSVKDVE
        P F PY      + +K   VS++ PP  FDFR +I+ +SRAAI + +PELLDLAD+GTL+L++K+ FGPVPAWR EFVEPEAIWL+GTSHISP+S   VE
Subjt:  PIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHISPKSVKDVE

Query:  RVVRAVKPDNVVVELCRSRQV
        RVVR VKPDNV VELCRSR+V
Subjt:  RVVRAVKPDNVVVELCRSRQV

Sequences

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CDS sequence

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ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTA
CCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCA
TTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAG
CCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTG
CAGGAGCAGGCAAGTTTGA

mRNA sequence

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Protein sequence

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MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVE
PEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSRQV

Lag0019980 (gene) of Sponge gourd (AG-4) v1 genome