CuGenDBv2

Gene ID	Lag0020051
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Tryptophanyl-tRNA synthetase
Genome location	chr5:47673397..47687042
RNA-Seq Expression	Lag0020051
Synteny	Lag0020051
Gene Ontology terms	GO:0006418 - tRNA aminoacylation for protein translation (biological process) GO:0004812 - aminoacyl-tRNA ligase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR001412 - Aminoacyl-tRNA synthetase, class I, conserved site IPR002305 - Aminoacyl-tRNA synthetase, class Ic IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAB2077403.1 hypothetical protein ES319_A06G098600v1 [Gossypium barbadense]

8.8e-05

54.41

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Query:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        VPE +S  + +RIVSGVQPTG IHLGNY    K   +  + + TLF IVDLHA T   D    SKATR
Subjt:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

TYI76880.1 hypothetical protein E1A91_D06G107700v1 [Gossypium mustelinum]

8.8e-05

54.41

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Query:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        VPE +S  + +RIVSGVQPTG IHLGNY    K   +  + + TLF IVDLHA T   D    SKATR
Subjt:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

TYJ29902.1 hypothetical protein E1A91_A06G098700v1 [Gossypium mustelinum]

8.8e-05

54.41

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Query:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        VPE +S  + +RIVSGVQPTG IHLGNY    K   +  + + TLF IVDLHA T   D    SKATR
Subjt:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

XP_012077393.1 tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]

3.9e-05

55.22

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Query:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        PE +S  + +RIVSGVQPTG IHLGNY    K   D  + + TLF IVDLHA T   D    SKATR
Subjt:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

XP_012077394.1 tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]

3.9e-05

55.22

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Query:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        PE +S  + +RIVSGVQPTG IHLGNY    K   D  + + TLF IVDLHA T   D    SKATR
Subjt:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

TrEMBL top hits

e value

%identity

Alignment

A0A061GJT7 Tryptophanyl-tRNA synthetase

4.3e-05

55.22

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Query:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        PE +S  + QRIVSGVQPTG IHLGNY    K      + + TLF IVDLHA T   D    SKATR
Subjt:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

A0A061GRP2 Tryptophanyl-tRNA synthetase

4.3e-05

55.22

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Query:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        PE +S  + QRIVSGVQPTG IHLGNY    K      + + TLF IVDLHA T   D    SKATR
Subjt:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

A0A067KDH8 Tryptophanyl-tRNA synthetase

1.9e-05

55.22

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Query:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        PE +S  + +RIVSGVQPTG IHLGNY    K   D  + + TLF IVDLHA T   D    SKATR
Subjt:  PERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

A0A5D2KJV6 Tryptophanyl-tRNA synthetase

4.3e-05

54.41

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Query:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        VPE +S  + +RIVSGVQPTG IHLGNY    K   +  + + TLF IVDLHA T   D    SKATR
Subjt:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

A0A5D2Q2M5 Tryptophanyl-tRNA synthetase

4.3e-05

54.41

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Query:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR
        VPE +S  + +RIVSGVQPTG IHLGNY    K   +  + + TLF IVDLHA T   D    SKATR
Subjt:  VPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGTGILDQ---SKATR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25840.1 Nucleotidylyl transferase superfamily protein

1.2e-04

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Query:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT
        S  + +R+VSGVQPTG +HLGNY    K        + TLF IVD HA T
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT

AT2G25840.2 Nucleotidylyl transferase superfamily protein

1.2e-04

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Query:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT
        S  + +R+VSGVQPTG +HLGNY    K        + TLF IVD HA T
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT

AT2G25840.3 Nucleotidylyl transferase superfamily protein

4.2e-05

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Query:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT
        S  + +R+VSGVQPTG +HLGNY    K        + TLF IVD HA T
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYNRCNKE-SDFTSGHMTLFSIVDLHAGT

Sequences

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CDS sequence

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ATGAGTATTTCGAGTGGTTTTGTCGTTGAGGGTGTTCCTGAGAGGAATTCTGACGTTTTGACGCAGAGGATAGTTTCTGGTGTTCAGCCAACAGGCTTTATTCACCTTGG
TAATTATAATAGGTGCAATAAAGAATCTGATTTCACCTCAGGACACATGACTCTCTTCTCCATTGTGGATCTCCATGCGGGTACTGGAATTTTGGATCAAAGCAAAGCAA
CTAGACTTGAGTTTTTCATGGACGAGTACAATAAAGCTTTGGATCAAGGGAAGAACTTGAGTTTTCATGGTGGAGAAAAGGAGATTGATAGTGCTCTGGTATATCGAGCC
ATCATTCTTCGAACATCTTGCCTTAGAGGTGTGATGCTCAGGGTTTCAATGATGCTATGGATGAAGCTTAGGAAAGATCAAGAAATGCTCAAAATAAGGGTTTCAATGAT
GCTATGGATGAAGCTTGGGAAAGATCGAGAAGTGCTCAAAATAAGGAGGTCGAAAGGTTTTGAATTCCTCAACTTCCAAGTCAAGTTCACATCATCAGTTTACTGA

mRNA sequence

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Protein sequence

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MSISSGFVVEGVPERNSDVLTQRIVSGVQPTGFIHLGNYNRCNKESDFTSGHMTLFSIVDLHAGTGILDQSKATRLEFFMDEYNKALDQGKNLSFHGGEKEIDSALVYRA
IILRTSCLRGVMLRVSMMLWMKLRKDQEMLKIRVSMMLWMKLGKDREVLKIRRSKGFEFLNFQVKFTSSVY

Lag0020051 (gene) of Sponge gourd (AG-4) v1 genome