CuGenDBv2

Gene ID	Lag0020141
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
Genome location	chr5:48388488..48390334
RNA-Seq Expression	Lag0020141
Synteny	Lag0020141
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576638.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-79

91.67

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASP   RI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKKD+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

KAG7014690.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-82

92.86

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPL QRI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKKD+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_022923077.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata]

4.1e-81

91.67

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPL QRI+ RAG+SHGFNFP RLQV ARKQR GEG GRRVWRRRKLTKKD+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_022984516.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima]

1.1e-81

92.26

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASPL QRI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKKD MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_023553427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucurbita pepo subsp. pepo]

1.8e-81

91.67

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPL QRI+ RAGISHGFNFPPRLQ+ ARKQR GEG GRRVWRRRKLTKKD MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAK+YVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CJC0 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

5.4e-79

90.42

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        M+TPIPTLSF S  + RIE RAGISH FNFPPR +VVARKQR  EGGGRRVWRRRKL KKD+MSHYKMDRIPFLEEQVRKVKEQGKL+TMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEF
        NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLKEEF
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEF

A0A6J1E559 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

2.0e-81

91.67

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPL QRI+ RAG+SHGFNFP RLQV ARKQR GEG GRRVWRRRKLTKKD+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A6J1E8L1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

9.2e-79

90.48

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASP   RI+ RAG+SHGFNFP RLQV ARKQR GEG GRRVWRRRKLTKKD+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A6J1J2D6 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

2.4e-79

91.07

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Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASP   RI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKKD MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A6J1J5H1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

5.2e-82

92.26

Show/hide

Query:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASPL QRI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKKD MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRFDFVNEVAAEAKEYVE+NRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Subjt:  NRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

1.1e-47

62.96

Show/hide

Query:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV
        T S  S +L  I+ R+G         + QV    QR  +  GRRVWRRR LTKKD+M  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FV
Subjt:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV

Query:  NEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        N VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  NEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

7.5e-49

62.96

Show/hide

Query:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV
        T S  S +L  I+ R+G         + QV    QR  +  GRRVWRRR LTKKD+M  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FV
Subjt:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV

Query:  NEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        N VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  NEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

AT5G24314.2 plastid transcriptionally active7

1.2e-46

Show/hide

Query:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRK--------LTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLS
        T S  S +L  I+ R+G         + QV    QR  +  GRRVWRRR         LTKKD+M  YKM R+PF+EEQVRK++E GK++TMDIE+LLL 
Subjt:  TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRK--------LTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLS

Query:  EDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  EDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTACTCCAATTCCGACACTGTCCTTTGCTTCACCTTTGTTGCAGAGGATTGAGGTGCGGGCGGGAATCTCTCATGGCTTTAACTTTCCTCCGCGATTACAGGTGGT
CGCCAGAAAGCAGCGTAGTGGTGAAGGTGGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATAACATGTCGCACTACAAAATGGATCGAATCCCATTCC
TTGAAGAACAGGTAAGGAAGGTTAAAGAACAGGGGAAGCTTATAACAATGGACATCGAAAGACTGTTATTATCAGAGGACAACCGTTTTGATTTTGTGAATGAGGTTGCA
GCTGAGGCTAAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGCTCCAAGAAAGCTATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCC
AGATGCATATGCAGAAGACGACCCATTTAAACCCGGACCTCATTATCTGAAAGAAGAATTTACTTAA

mRNA sequence

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Protein sequence

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MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVA
AEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

Lag0020141 (gene) of Sponge gourd (AG-4) v1 genome