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Lag0020150 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020150
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-binding protein 2-like isoform X1
Genome locationchr5:48436037..48436958
RNA-Seq ExpressionLag0020150
SyntenyLag0020150
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2616673.1 unnamed protein product [Spirodela intermedia]2.7e-0572.97Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        LL    +  DFAGYKFDE DRDS NLRLQFARFPG R
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

KAB5524074.1 hypothetical protein DKX38_021823 [Salix brachista]5.5e-0675.68Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        L+Q   V+LDFAGY+FDE DRDSV+LRLQFAR+PGAR
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

KAG6422544.1 hypothetical protein SASPL_119120 [Salvia splendens]3.6e-0570.27Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        L+ +I++EL+ AGY FDE DRDS +LRLQFARFPGAR
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

KAG6753630.1 hypothetical protein POTOM_041616 [Populus tomentosa]2.5e-0675.68Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        L+Q  +V+LDFAGY+FDE DRDS NLRLQFAR+PGAR
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

XP_021626951.1 RNA-binding protein 1-like isoform X1 [Manihot esculenta]5.5e-0681.82Show/hide
Query:  ISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        + V+LDFAGYKFDE DRDSV+LRLQFAR+PGAR
Subjt:  ISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

TrEMBL top hitse value%identityAlignment
A0A4D9AM41 RRM domain-containing protein4.5e-0657.14Show/hide
Query:  ILLSKGGKSGLL------FLLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        IL+  GG+S L        L+ +I++EL+ AGY FDE DRDS +LRLQFARFPGAR
Subjt:  ILLSKGGKSGLL------FLLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

A0A5C7GV55 RRM domain-containing protein2.3e-0583.87Show/hide
Query:  VELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        V+LDFAGYKFDE DRD V LRLQFAR+PGAR
Subjt:  VELDFAGYKFDEFDRDSVNLRLQFARFPGAR

A0A5N5K1A9 RRM domain-containing protein2.7e-0675.68Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        L+Q   V+LDFAGY+FDE DRDSV+LRLQFAR+PGAR
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

A0A6J1J2D2 RNA-binding protein 2-like isoform X13.9e-0577.14Show/hide
Query:  HISVELD-FAGYKFDEFDRDSVNLRLQFARFPGAR
        H +  +D   GYKFDEFDRDSVNLRLQFARFPGAR
Subjt:  HISVELD-FAGYKFDEFDRDSVNLRLQFARFPGAR

A0A7I8IEW4 Hypothetical protein1.3e-0572.97Show/hide
Query:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR
        LL    +  DFAGYKFDE DRDS NLRLQFARFPG R
Subjt:  LLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATCATACGACTCTCAAATTCCAAAGTTATGTGGCTTGAAGAATTTGAGATTGTTTATGCTATTCTGCTTTCGAAAGGTGGGAAATCTGGGTTGCTGTTTCTGCT
ACAACATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTT
GCGCGTACGATGAAGTTATGAATTTGAGGCAATATGACAGTCCCCCCATATCAAAAACCGGAGCGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTATCATACGACTCTCAAATTCCAAAGTTATGTGGCTTGAAGAATTTGAGATTGTTTATGCTATTCTGCTTTCGAAAGGTGGGAAATCTGGGTTGCTGTTTCTGCT
ACAACATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTT
GCGCGTACGATGAAGTTATGAATTTGAGGCAATATGACAGTCCCCCCATATCAAAAACCGGAGCGTATTAG
Protein sequenceShow/hide protein sequence
MFIIRLSNSKVMWLEEFEIVYAILLSKGGKSGLLFLLQHISVELDFAGYKFDEFDRDSVNLRLQFARFPGARICAYDEVMNLRQYDSPPISKTGAY