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Lag0020527 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020527
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr7:100079..100387
RNA-Seq ExpressionLag0020527
SyntenyLag0020527
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI78139.1 hypothetical protein CRG98_001467 [Punica granatum]1.6e-1949.02Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M+ CK +S+P+ +G  +S HD D   NP  YRS+  +LQY TLTR D++F VN+ CQF+H PT VHW+ VKRIL+YLK T    L+F+     SL  ++D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

RVW23101.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.9e-2052.48Show/hide
Query:  ISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDV
        + CKA++TPM A  ++SA    LL++P QY SI  ALQYCT+TR D+SF VNK CQF+ +PT +HW  VK++L+YLK TT   L F     L  T+Y DV
Subjt:  ISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDV

Query:  D
        D
Subjt:  D

RVW77515.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.2e-2050.98Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        +  CKA++T M    + SA +  LL++P QYR+I  ALQYCT+TR D+SF VNK CQF+ +PT +HW  VKR+L+YLK TT   L+F     L LT+Y D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

RVX05509.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.1e-2051.96Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M  CK  STPM+  +S+S +D + LS+P  Y  I  ALQYCT+TR D++F VNK CQF+H+PT  HW  VKRIL YLK+T    ++ +    LSLT Y D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
        VD
Subjt:  VD

XP_038891702.1 uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]9.3e-2053.92Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        +I CK + +PMA G S+S  D   L NP  YR +  ALQYCTLTR D+SF VNK CQF+HAPT  H    KR+L YLK TTH  +   K   L+LT YTD
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

TrEMBL top hitse value%identityAlignment
A0A2I0LBT1 Reverse transcriptase Ty1/copia-type domain-containing protein7.7e-2049.02Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M+ CK +S+P+ +G  +S HD D   NP  YRS+  +LQY TLTR D++F VN+ CQF+H PT VHW+ VKRIL+YLK T    L+F+     SL  ++D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

A0A438CIR2 Retrovirus-related Pol polyprotein from transposon RE19.1e-2152.48Show/hide
Query:  ISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDV
        + CKA++TPM A  ++SA    LL++P QY SI  ALQYCT+TR D+SF VNK CQF+ +PT +HW  VK++L+YLK TT   L F     L  T+Y DV
Subjt:  ISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDV

Query:  D
        D
Subjt:  D

A0A438GZ59 Retrovirus-related Pol polyprotein from transposon RE11.5e-2050.98Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        +  CKA++T M    + SA +  LL++P QYR+I  ALQYCT+TR D+SF VNK CQF+ +PT +HW  VKR+L+YLK TT   L+F     L LT+Y D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

A0A438J968 Retrovirus-related Pol polyprotein from transposon RE13.4e-2051.96Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M  CK  STPM+  +S+S +D + LS+P  Y  I  ALQYCT+TR D++F VNK CQF+H+PT  HW  VKRIL YLK+T    ++ +    LSLT Y D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
        VD
Subjt:  VD

Q65X82 Putative polyprotein1.3e-1951.92Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLS--NPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSY
        M  CK +STP++    +SAH+ DLL   +   YRS+  ALQY TLTR D++F VNK CQFLHAPT VHW  VKRIL+YLK  T L L   K  ++ +++Y
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLS--NPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSY

Query:  TDVD
        +D D
Subjt:  TDVD

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.3e-0538.36Show/hide
Query:  YRSIFVALQY-CTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDVD
        Y S   A+ Y   +TR DL+  V    QF   P   HW  +KR+L+YL++T    L F + GT  L  Y+D D
Subjt:  YRSIFVALQY-CTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDVD

P25600 Putative transposon Ty5-1 protein YCL074W9.4e-0734.02Show/hide
Query:  KAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLT-RLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        K   TP+     +    S  L +   Y+SI   L +C  T R D+S+ V+   +FL  P  +H    +R+L+YL TT  +CL +R    L+LT Y D
Subjt:  KAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLT-RLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

P92519 Uncharacterized mitochondrial protein AtMg008101.1e-1240.2Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M+ CK MSTP+    + S   +    +P  +RSI  ALQY TLTR D+S+ VN  CQ +H PT   ++L+KR+L+Y+K T    L   K   L++ ++ D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.9e-1542.16Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        MI+ K ++TPMA    +S +    L++P +YR I  +LQY   TR D+S+ VN+  QF+H PT  H   +KRIL+YL  T +  +  +K  TLSL +Y+D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.5e-1742.16Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M++ K ++TPMA    ++ H    L +P +YR I  +LQY   TR DLS+ VN+  Q++H PT  HWN +KR+L+YL  T    +  +K  TLSL +Y+D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.2e-1136Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        ++ CK  S PM    + SAH      + K YR +   L Y  +TRLD+SF VNK  QF  AP   H   V +IL Y+K T    L +     + L  ++D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

ATMG00810.1 DNA/RNA polymerases superfamily protein8.1e-1440.2Show/hide
Query:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD
        M+ CK MSTP+    + S   +    +P  +RSI  ALQY TLTR D+S+ VN  CQ +H PT   ++L+KR+L+Y+K T    L   K   L++ ++ D
Subjt:  MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTD

Query:  VD
         D
Subjt:  VD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCATGTAAGGCTATGTCCACTCCTATGGCAGCTGGTACATCTATTTCTGCTCATGATAGTGATTTATTATCTAATCCTAAGCAGTATCGTAGTATCTTTGTGGC
TCTACAATATTGCACTTTGACTAGGCTTGATTTGAGCTTTGTTGTAAACAAAGCATGTCAGTTTCTTCATGCCCCTACCTTCGTTCACTGGAATTTGGTGAAGCGTATAC
TTCAGTATCTAAAGACTACTACTCATCTTTGTCTTAATTTCAGGAAGTTTGGAACTCTTTCTTTGACTAGTTACACAGATGTCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCATGTAAGGCTATGTCCACTCCTATGGCAGCTGGTACATCTATTTCTGCTCATGATAGTGATTTATTATCTAATCCTAAGCAGTATCGTAGTATCTTTGTGGC
TCTACAATATTGCACTTTGACTAGGCTTGATTTGAGCTTTGTTGTAAACAAAGCATGTCAGTTTCTTCATGCCCCTACCTTCGTTCACTGGAATTTGGTGAAGCGTATAC
TTCAGTATCTAAAGACTACTACTCATCTTTGTCTTAATTTCAGGAAGTTTGGAACTCTTTCTTTGACTAGTTACACAGATGTCGATTGA
Protein sequenceShow/hide protein sequence
MISCKAMSTPMAAGTSISAHDSDLLSNPKQYRSIFVALQYCTLTRLDLSFVVNKACQFLHAPTFVHWNLVKRILQYLKTTTHLCLNFRKFGTLSLTSYTDVD