; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0020542 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020542
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr7:205185..205730
RNA-Seq ExpressionLag0020542
SyntenyLag0020542
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]2.1e-2268.92Show/hide
Query:  NDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIR
        +D+KMKID+PTY GK + + FL+WV+  ENFFNYM+TP+ KKV LV LKLR GA AWWDQLE+NRQRYGK  IR
Subjt:  NDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIR

KAA0061454.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2253.21Show/hide
Query:  EDNSSEEEYEHQEMQGEGQRNYRYQYQQ-----ENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQ
        + +SS+E+       G+ +    Y+ ++      +D+KMKID+PTY GK +IE FL+W++++ENFFNYM+TP+ KK+ LVALKL GGA AWWDQLE+NRQ
Subjt:  EDNSSEEEYEHQEMQGEGQRNYRYQYQQ-----ENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQ

Query:  RYGKRTIRS
        RYGK  IRS
Subjt:  RYGKRTIRS

TYK22339.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-2157.3Show/hide
Query:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        G+  +    + +  +D++MKID+  Y GK +IE FL+WV+  ENFFNYM+ P+ KKV LVALKLRGGA  WWDQLE+NRQR GK  IRS
Subjt:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

XP_031744062.1 uncharacterized protein LOC116404773 [Cucumis sativus]9.4e-2360.67Show/hide
Query:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        G   R    +  + +D+KMKID+P Y GK  IE FL+W++  ENFFNYM+TP  KKV LVALKLR GA AWWDQLE+NRQR GK+ IRS
Subjt:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]1.5e-2064.79Show/hide
Query:  MKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        MK+D+P+Y GK +IE FL+W++  ENFF+YM+TP  KKV+LVALKL+GGA AWW+QLE+NRQR  KR +RS
Subjt:  MKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

TrEMBL top hitse value%identityAlignment
A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X41.0e-2268.92Show/hide
Query:  NDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIR
        +D+KMKID+PTY GK + + FL+WV+  ENFFNYM+TP+ KKV LV LKLR GA AWWDQLE+NRQRYGK  IR
Subjt:  NDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIR

A0A5D3CH16 Reverse transcriptase1.0e-2253.21Show/hide
Query:  EDNSSEEEYEHQEMQGEGQRNYRYQYQQ-----ENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQ
        + +SS+E+       G+ +    Y+ ++      +D+KMKID+PTY GK +IE FL+W++++ENFFNYM+TP+ KK+ LVALKL GGA AWWDQLE+NRQ
Subjt:  EDNSSEEEYEHQEMQGEGQRNYRYQYQQ-----ENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQ

Query:  RYGKRTIRS
        RYGK  IRS
Subjt:  RYGKRTIRS

A0A5D3CJ99 Reverse transcriptase1.6e-2045.19Show/hide
Query:  PRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEE---YEHQEMQ-GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNN
        P  +P  +A     +    ++   E +  +S E+     ++++MQ  +  R +  Q +  +D+KMKID+PTY GK ++E FL+W+ + ENFFNYM+T + 
Subjt:  PRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEE---YEHQEMQ-GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNN

Query:  KKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        KKV LVALKLRGGA AWWDQ+E+NRQRYGK  I S
Subjt:  KKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

A0A5D3DGG3 Reverse transcriptase1.9e-2157.3Show/hide
Query:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        G+  +    + +  +D++MKID+  Y GK +IE FL+WV+  ENFFNYM+ P+ KKV LVALKLRGGA  WWDQLE+NRQR GK  IRS
Subjt:  GEGQRNYRYQYQQENDFKMKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X22.1e-2038.85Show/hide
Query:  IEDSRTRYGYEKRSAEQRTIQETDPVPRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEEYEHQEMQGEGQRNYRYQYQQENDFKMKIDIPTYGGKMEI
        I D + R   + +  ++       P P   P +H G+   + N   + + + ++ +  +E +  Q  +   + +Y  +     DFKMKID+PT+ GKM++
Subjt:  IEDSRTRYGYEKRSAEQRTIQETDPVPRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEEYEHQEMQGEGQRNYRYQYQQENDFKMKIDIPTYGGKMEI

Query:  EVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS
        E FL+ V++VENFF+Y NTP +KKVKLVA K++ GA AWWDQLE+N +R GK+ IRS
Subjt:  EVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAACAAACCGGAACAACCAAGTACAATTCCAACAATGCAAATGGGAAGAACCCAACAAGATTTCCAAATTGAAGATAGTAGAACAAGATATGGGTATGAAAAACG
ATCCGCAGAACAAAGGACTATTCAAGAAACAGATCCGGTACCAAGATTCCATCCAGAACACCACGCGGGACAACAAGAATTCAAGCACAACCCTTTATTTAGAAGGCAAC
CCGAGTGGAATGAGGACAACTCTAGTGAGGAAGAGTATGAGCATCAAGAAATGCAAGGGGAAGGACAAAGAAACTATAGATATCAATATCAACAAGAGAATGATTTTAAA
ATGAAGATCGATATACCAACATATGGTGGTAAAATGGAGATTGAGGTCTTCTTGGAATGGGTTAGACACGTAGAAAACTTTTTTAATTATATGAATACCCCCAATAACAA
GAAGGTAAAATTGGTGGCTCTAAAATTGAGGGGAGGAGCTCAAGCATGGTGGGATCAACTAGAACTAAACCGCCAAAGATATGGTAAAAGGACAATCCGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAACAAACCGGAACAACCAAGTACAATTCCAACAATGCAAATGGGAAGAACCCAACAAGATTTCCAAATTGAAGATAGTAGAACAAGATATGGGTATGAAAAACG
ATCCGCAGAACAAAGGACTATTCAAGAAACAGATCCGGTACCAAGATTCCATCCAGAACACCACGCGGGACAACAAGAATTCAAGCACAACCCTTTATTTAGAAGGCAAC
CCGAGTGGAATGAGGACAACTCTAGTGAGGAAGAGTATGAGCATCAAGAAATGCAAGGGGAAGGACAAAGAAACTATAGATATCAATATCAACAAGAGAATGATTTTAAA
ATGAAGATCGATATACCAACATATGGTGGTAAAATGGAGATTGAGGTCTTCTTGGAATGGGTTAGACACGTAGAAAACTTTTTTAATTATATGAATACCCCCAATAACAA
GAAGGTAAAATTGGTGGCTCTAAAATTGAGGGGAGGAGCTCAAGCATGGTGGGATCAACTAGAACTAAACCGCCAAAGATATGGTAAAAGGACAATCCGAAGCTGA
Protein sequenceShow/hide protein sequence
MGNKPEQPSTIPTMQMGRTQQDFQIEDSRTRYGYEKRSAEQRTIQETDPVPRFHPEHHAGQQEFKHNPLFRRQPEWNEDNSSEEEYEHQEMQGEGQRNYRYQYQQENDFK
MKIDIPTYGGKMEIEVFLEWVRHVENFFNYMNTPNNKKVKLVALKLRGGAQAWWDQLELNRQRYGKRTIRS