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Lag0020623 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020623
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Genome locationchr7:885405..885797
RNA-Seq ExpressionLag0020623
SyntenyLag0020623
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597057.1 hypothetical protein SDJN03_10237, partial [Cucurbita argyrosperma subsp. sororia]2.3e-0739.82Show/hide
Query:  QRSSSLPRHTPNGTSDEVVPQPEIPPPVITAAAPGPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKEDDEKERNLNWSSLLRRPLV--
        QR  SLPR TP   S       +IPPP + AAAP P     KS H++  +A +NIRG++VG +M+IN S +G+EI      +K    N+    ++ ++  
Subjt:  QRSSSLPRHTPNGTSDEVVPQPEIPPPVITAAAPGPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKEDDEKERNLNWSSLLRRPLV--

Query:  -NANCQGVNNSFV
         N N QGVNNS +
Subjt:  -NANCQGVNNSFV

XP_004133796.1 extensin [Cucumis sativus]9.7e-0637.35Show/hide
Query:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIE-------IGAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        G   P++K  H + +  V+NI+G+NVGA+M I  SSDG E       +G  +++E++ N + S+   +  +N+N QGVNNS +
Subjt:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIE-------IGAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

XP_008437849.1 PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo]1.3e-0538.55Show/hide
Query:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        G   P++K  H + +  V+NI+G NVGA+M I  SSDG EI       G  +++E++ N + S+   +  +N+N QGVNNS +
Subjt:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

XP_023521993.1 uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo]6.1e-0832.95Show/hide
Query:  MTTLPRFGRRWQRSSSLPRHTPNGTSDEVVP----QPEI-PPPVITA-------------AAPGPLSPKE------------KSDH--------------
        M  LPRFGR W R SSLPR       D   P    +PE+ PPP  TA               P P+  K             K+DH              
Subjt:  MTTLPRFGRRWQRSSSLPRHTPNGTSDEVVP----QPEI-PPPVITA-------------AAPGPLSPKE------------KSDH--------------

Query:  -YRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV
         ++Q+  V+NI+G+NVGA+M I  SSD  E   K+       ++EK+ N + S++  +  +N+N QGVNNS +
Subjt:  -YRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV

XP_038904572.1 pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida]1.8e-0439.24Show/hide
Query:  PKEKSDHYRQERA----VVNIRGKNVGAIMQINGSSDGIEIGAK---EDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        P +K  H +Q++     V+NI+G+NVGA+M I  SSDG EI  K   +++E++ N +  +   +  +N+N QGVNNS +
Subjt:  PKEKSDHYRQERA----VVNIRGKNVGAIMQINGSSDGIEIGAK---EDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

TrEMBL top hitse value%identityAlignment
A0A0A0L5T3 Uncharacterized protein4.7e-0637.35Show/hide
Query:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIE-------IGAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        G   P++K  H + +  V+NI+G+NVGA+M I  SSDG E       +G  +++E++ N + S+   +  +N+N QGVNNS +
Subjt:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIE-------IGAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

A0A1S3AVJ6 microtubule-associated protein RP/EB family member 1-like6.2e-0638.55Show/hide
Query:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        G   P++K  H + +  V+NI+G NVGA+M I  SSDG EI       G  +++E++ N + S+   +  +N+N QGVNNS +
Subjt:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

A0A5A7TZ60 Microtubule-associated protein RP/EB family member 1-like6.2e-0638.55Show/hide
Query:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        G   P++K  H + +  V+NI+G NVGA+M I  SSDG EI       G  +++E++ N + S+   +  +N+N QGVNNS +
Subjt:  GPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEI-------GAKEDDEKERNLNWSSLLRRPLVNANCQGVNNSFV

A0A6J1IEX0 DNA-directed RNA polymerase II subunit 1-like isoform X21.2e-0439.24Show/hide
Query:  PKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        P++K  H +Q+  V+NI+G+NVGA+M I  SSD  E   K+       ++EK+ N + S++  +  +N+N QGVNNS +
Subjt:  PKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV

A0A6J1IHF4 DNA-directed RNA polymerase II subunit 1-like isoform X11.2e-0439.24Show/hide
Query:  PKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV
        P++K  H +Q+  V+NI+G+NVGA+M I  SSD  E   K+       ++EK+ N + S++  +  +N+N QGVNNS +
Subjt:  PKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKE-------DDEKERNLNWSSLLRRPLVNANCQGVNNSFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTCCTCGCTTTGGTCGTAGATGGCAACGTTCCTCTTCTCTTCCCCGCCATACTCCAAATGGCACCTCTGACGAAGTGGTGCCCCAACCCGAAATTCCACC
ACCCGTCATCACCGCCGCCGCCCCCGGGCCACTCTCTCCCAAGGAAAAATCTGATCATTACCGTCAGGAGAGGGCGGTTGTAAACATTAGAGGCAAGAATGTGGGTGCTA
TTATGCAAATTAATGGATCATCTGATGGGATAGAAATTGGTGCAAAGGAAGATGACGAGAAAGAAAGGAATCTAAATTGGTCGTCGCTGCTGAGACGACCTTTGGTGAAT
GCCAATTGTCAAGGGGTCAACAATTCGTTTGTGCAACTCATCTTGCACTTATCGGACTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTCCTCGCTTTGGTCGTAGATGGCAACGTTCCTCTTCTCTTCCCCGCCATACTCCAAATGGCACCTCTGACGAAGTGGTGCCCCAACCCGAAATTCCACC
ACCCGTCATCACCGCCGCCGCCCCCGGGCCACTCTCTCCCAAGGAAAAATCTGATCATTACCGTCAGGAGAGGGCGGTTGTAAACATTAGAGGCAAGAATGTGGGTGCTA
TTATGCAAATTAATGGATCATCTGATGGGATAGAAATTGGTGCAAAGGAAGATGACGAGAAAGAAAGGAATCTAAATTGGTCGTCGCTGCTGAGACGACCTTTGGTGAAT
GCCAATTGTCAAGGGGTCAACAATTCGTTTGTGCAACTCATCTTGCACTTATCGGACTTCTGA
Protein sequenceShow/hide protein sequence
MTTLPRFGRRWQRSSSLPRHTPNGTSDEVVPQPEIPPPVITAAAPGPLSPKEKSDHYRQERAVVNIRGKNVGAIMQINGSSDGIEIGAKEDDEKERNLNWSSLLRRPLVN
ANCQGVNNSFVQLILHLSDF