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Lag0020672 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020672
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr7:1230505..1232326
RNA-Seq ExpressionLag0020672
SyntenyLag0020672
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]4.8e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
QRM91182.1 RNA polymerase beta subunit [Pueraria montana var. lobata]4.8e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
YP_009770419.1 RNA polymerase beta subunit [Guilandina bonduc]3.7e-1695.83Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
        +NKRIRSVADLLQDQFGLALVRLENMV+GTICGAIRHKLIPTPQNLVI
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
YP_010033428.1 RNA polymerase beta subunit [Ormosia formosana]4.8e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
YP_010046467.1 RNA polymerase beta subunit [Lablab purpureus]1.7e-1697.92Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
TrEMBL top hitse value%identityAlignment
A0A0F7RJJ1 DNA-directed RNA polymerase subunit beta2.3e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
A0A0K0LVN8 DNA-directed RNA polymerase subunit beta2.3e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
A0A218KG28 DNA-directed RNA polymerase subunit beta2.3e-1697.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
A0A6H0EFV1 DNA-directed RNA polymerase subunit beta1.8e-1695.83Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
        +NKRIRSVADLLQDQFGLALVRLENMV+GTICGAIRHKLIPTPQNLVI
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
A0A7T0CNS2 RNA polymerase beta subunit8.0e-1797.92Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVI
SwissProt top hitse value%identityAlignment
A4GGA5 DNA-directed RNA polymerase subunit beta6.3e-1997.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Q09X25 DNA-directed RNA polymerase subunit beta1.4e-1895.74Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGT+CGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Q4VZP1 DNA-directed RNA polymerase subunit beta6.3e-1997.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Q8HVY5 DNA-directed RNA polymerase subunit beta6.3e-1997.87Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Q8S8X9 DNA-directed RNA polymerase subunit beta1.8e-1895.74Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQFGLALVRLEN+VRGTICGAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta6.1e-1787.23Show/hide
Query:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV
        +NKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIRHKLIPTPQNLV
Subjt:  RNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGGAACAGGAGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATTTCAAGAAATAAACGGATTCGTTCTGTAGCAGATCT
CTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGTGGAGCAATTAGACATAAATTGATACCGACTCCACAGAATTTGGTAA
TTTTGGACCACCATAGGGTACGAGGAGCTGACGAGGACAACCGAGTGGAGATGGGACCAGGAAACGACCTAGAGGAAGACCAAACCAACGATGTAACACCCCATGCCCAG
GATTCGGAATTCGGATTTGGCACTAAGGCCCCGACATTCCCCTGCGACCCGGCCACGTTACCATACTTGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGGAACAGGAGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATTTCAAGAAATAAACGGATTCGTTCTGTAGCAGATCT
CTTACAAGATCAATTCGGATTGGCTCTAGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGTGGAGCAATTAGACATAAATTGATACCGACTCCACAGAATTTGGTAA
TTTTGGACCACCATAGGGTACGAGGAGCTGACGAGGACAACCGAGTGGAGATGGGACCAGGAAACGACCTAGAGGAAGACCAAACCAACGATGTAACACCCCATGCCCAG
GATTCGGAATTCGGATTTGGCACTAAGGCCCCGACATTCCCCTGCGACCCGGCCACGTTACCATACTTGTCTTAA
Protein sequenceShow/hide protein sequence
MTGTGGDTRYTTILNQKRDFKKWQISRNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVILDHHRVRGADEDNRVEMGPGNDLEEDQTNDVTPHAQ
DSEFGFGTKAPTFPCDPATLPYLS