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Lag0020717 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020717
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpentatricopeptide repeat-containing protein At3g61520, mitochondrial-like
Genome locationchr7:1571228..1572530
RNA-Seq ExpressionLag0020717
SyntenyLag0020717
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592866.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.6e-0733.76Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LPGSEF+PND TADIV                      + KFGKHHVVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

KAG7025273.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0634.39Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR--------------------------------------
        M LPGSEF+PND TADIV                      + KFGKHHVVPNPITLT L+S+                                      
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR--------------------------------------

Query:  -----------------SLALNFIHVPLLY-----SGITDDALEVFEKMKGEKEEAK
                         ++  N I   +L      S + DDALEVFEKMKGEKEEAK
Subjt:  -----------------SLALNFIHVPLLY-----SGITDDALEVFEKMKGEKEEAK

XP_022960097.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata]6.6e-0733.76Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LPGSEF+PND TADIV                      + KFGKHHVVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

XP_023004956.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima]5.6e-0633.12Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LPGSEF+PND TADIV                      + KFGKH VVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

XP_023514674.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita pepo subsp. pepo]4.3e-0633.12Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LP SEF+PND TADIV                      + KFGKHHVVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

TrEMBL top hitse value%identityAlignment
A0A6J1D191 pentatricopeptide repeat-containing protein At5g284605.6e-0435.9Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGITDDA--LEVFEKMKG
        M LPGSEF+PND TADIV                      + KFGKHHV PN ITLT L+SR        LA N +   +  +G+ D A    +   +  
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGITDDA--LEVFEKMKG

Query:  EKEEAKLSNAIEFFKEM
        E+E  K++  +   K+M
Subjt:  EKEEAKLSNAIEFFKEM

A0A6J1GNK8 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like3.3e-0440.45Show/hide
Query:  MSLPGSEFQPNDTTADIVLIK----------------------FGKHHVVPNPITLTPLMS-------RSLALNFIHVPLLYSGITDDA
        M LPGSEF+PN  TADIV  K                      FG+HHVVPNPITLT L+S         LA N +    + +G+ D A
Subjt:  MSLPGSEFQPNDTTADIVLIK----------------------FGKHHVVPNPITLTPLMS-------RSLALNFIHVPLLYSGITDDA

A0A6J1H7V3 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like3.2e-0733.76Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LPGSEF+PND TADIV                      + KFGKHHVVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

A0A6J1KTL0 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like2.7e-0633.12Show/hide
Query:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------
        M LPGSEF+PND TADIV                      + KFGKH VVPNPITLT L+S+        LA + +   + ++G+               
Subjt:  MSLPGSEFQPNDTTADIV----------------------LIKFGKHHVVPNPITLTPLMSR-------SLALNFIHVPLLYSGI---------------

Query:  --------------------------------------TDDALEVFEKMKGEKEEAK
                                               DDALEVFEKMKGEKEEAK
Subjt:  --------------------------------------TDDALEVFEKMKGEKEEAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTTCCAGGTTCGGAGTTTCAACCCAATGATACAACTGCTGATATTGTTTTGATCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACGCCATT
GATGTCAAGATCTCTTGCATTGAATTTTATTCATGTACCCCTCCTCTACTCGGGCATCACTGATGATGCATTGGAAGTGTTTGAGAAAATGAAGGGAGAAAAGGAGGAGG
CCAAGTTGAGCAATGCAATTGAGTTCTTCAAGGAAATGCAGAAGAAGAGCTTGAAAAAGTCGACAATATTGGTAAGGTTGAATGATGCCAGCTTTGTCGTGTCGAAGTCG
ACGGTATCGGTTTCGACTGGATCTTGTTTGCTACTATCTTCTTGTCAGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTTCCAGGTTCGGAGTTTCAACCCAATGATACAACTGCTGATATTGTTTTGATCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACGCCATT
GATGTCAAGATCTCTTGCATTGAATTTTATTCATGTACCCCTCCTCTACTCGGGCATCACTGATGATGCATTGGAAGTGTTTGAGAAAATGAAGGGAGAAAAGGAGGAGG
CCAAGTTGAGCAATGCAATTGAGTTCTTCAAGGAAATGCAGAAGAAGAGCTTGAAAAAGTCGACAATATTGGTAAGGTTGAATGATGCCAGCTTTGTCGTGTCGAAGTCG
ACGGTATCGGTTTCGACTGGATCTTGTTTGCTACTATCTTCTTGTCAGCCTTAA
Protein sequenceShow/hide protein sequence
MSLPGSEFQPNDTTADIVLIKFGKHHVVPNPITLTPLMSRSLALNFIHVPLLYSGITDDALEVFEKMKGEKEEAKLSNAIEFFKEMQKKSLKKSTILVRLNDASFVVSKS
TVSVSTGSCLLLSSCQP