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Lag0020864 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020864
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIB domain-containing protein
Genome locationchr7:2682861..2684561
RNA-Seq ExpressionLag0020864
SyntenyLag0020864
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582547.1 hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5780.39Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV
        MSSGFSNGIRVFRGCR+LLAP KSSA VP  +  +   SK+ ++ KEK P  SD AAAAAPKPK + EMTRPTG+LKV QVSPAL NFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        KQIWSYIKLHNLQNP+NKREI+CDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022146901.1 upstream activation factor subunit spp27-like [Momordica charantia]1.7e-6287.9Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTT----SKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR
        MSSG SNGIRVFRGCRALLAPSKSSA+VPAA   AAAKSK T    S+SKEK  PSSDTAAAAAPKPK+K EMTRP GILKVAQVSPAL NFLGV EASR
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTT----SKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAVKQIWSYIKLHNLQNPANKREI+CDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022924718.1 upstream activation factor subunit spp27-like [Cucurbita moschata]1.3e-5780.39Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV
        MSSGFSNGIRVFRGC +LLAP KSSA VP  +  +   SK+ ++ KEK PP SD AAAAAPKPK + EMTRPTG+LKV QVSPAL NFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        KQIWSYIKLHNLQNP+NKREI+CDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022980440.1 protein TRI1-like [Cucurbita maxima]5.6e-6185.99Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKS----KEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR
        MSSGFSNGIRVFRGCRALLAPSKSSA VP     AA KS+TTSKS    KEK PP SD AAAAAPKPKVK EMTR TG LKV QVSPAL NFLGVSEASR
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKS----KEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAVKQIWSYIKLHNLQNPANKREI+CDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_038877222.1 upstream activation factor subunit UAF30 [Benincasa hispida]1.7e-5781.82Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTA-AAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA
        MSSGFSNGIRVFR CRALLAPSKSSA V A +  +   SK   KSK K PP+SDTA  +A PKPK+K E+TRPTGILKV QVSPALSNFLGVSEASR DA
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTA-AAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKLHNLQNPANKREI+CDDKLKAIFEGREKVGFLEIGKLLA HFVKN
Subjt:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

TrEMBL top hitse value%identityAlignment
A0A6J1D0R8 upstream activation factor subunit spp27-like8.4e-6387.9Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTT----SKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR
        MSSG SNGIRVFRGCRALLAPSKSSA+VPAA   AAAKSK T    S+SKEK  PSSDTAAAAAPKPK+K EMTRP GILKVAQVSPAL NFLGV EASR
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTT----SKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAVKQIWSYIKLHNLQNPANKREI+CDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1EDA2 upstream activation factor subunit spp27-like6.2e-5880.39Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV
        MSSGFSNGIRVFRGC +LLAP KSSA VP  +  +   SK+ ++ KEK PP SD AAAAAPKPK + EMTRPTG+LKV QVSPAL NFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        KQIWSYIKLHNLQNP+NKREI+CDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  KQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1GFF6 upstream activation factor subunit UAF30-like6.5e-5580.52Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSS-DTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA
        MSSGFSNGIRVFRGCRALLAPSKSSAAVPAA            KSKEKAPPSS D  +AAAPKPK+K   TR TGILKV +VSPALSNFLGVSE SRT+A
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSS-DTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKL+NLQNPANKREIFCDDKLKAIFEGREKVGFLEI KLL  HFVK+
Subjt:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1IKQ4 protein TRI1-like1.7e-5581.17Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSS-DTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA
        MSSGFSNGIRVFRGC ALLAPSKSSAAVP     A+ KSK TSKSKEKAPPSS D  +AAAPKP +K   TR TGILKV +VSPALSNFLGVSE SRT+A
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSS-DTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDA

Query:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        VKQIWSYIKL+NLQNPANKREIFCDDKLKAIFEGREKVGFLEI K L+ HFVK+
Subjt:  VKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1IWB1 protein TRI1-like2.7e-6185.99Show/hide
Query:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKS----KEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR
        MSSGFSNGIRVFRGCRALLAPSKSSA VP     AA KS+TTSKS    KEK PP SD AAAAAPKPKVK EMTR TG LKV QVSPAL NFLGVSEASR
Subjt:  MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKS----KEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAVKQIWSYIKLHNLQNPANKREI+CDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.1e-1153.57Show/hide
Query:  KVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFE
        K  ++SP L+ FLG+ + SR   VK++W YIK H+LQ+P +KR I CDDKLK++FE
Subjt:  KVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFE

Q05024 Protein TRI12.1e-1038.79Show/hide
Query:  TAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEG
        T   K K+ SKSK K             K K     +    + KV   +P L  FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K++ IF  
Subjt:  TAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEG

Query:  REKVGFLEIGKLLARH
         +K+    + KLL +H
Subjt:  REKVGFLEIGKLLARH

Q08747 Upstream activation factor subunit UAF309.4e-1134.78Show/hide
Query:  KSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKV
        K  T SK +      +D+        K KG +++     +   +S +L++ LG  E +RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I    +  
Subjt:  KSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKV

Query:  GFLEIGKLLARHFVK
           E+ K+LA H  +
Subjt:  GFLEIGKLLARHFVK

Q2TBN1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 12.0e-0534.33Show/hide
Query:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLL
        ++ P L+  LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F EI + L
Subjt:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLL

Q9P7S3 SWI/SNF and RSC complexes subunit ssr31.7e-0740.58Show/hide
Query:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLAR
        ++S A +N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F  I +L+ R
Subjt:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLAR

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.4e-2258.75Show/hide
Query:  GILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        GI K   VS  L++F G  E +R  A+K++W Y+KLHNLQNPANK+EI CDDKLK IF+G++KVG  EI KLL+ HF K+
Subjt:  GILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT2G14880.1 SWIB/MDM2 domain superfamily protein5.5e-2250.52Show/hide
Query:  TAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFV
        T+A  + +P    +   P GI+K   VSP + + + + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IFEGR++VGFLEI KL+  HF+
Subjt:  TAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.8e-2666.67Show/hide
Query:  TGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TGILKV  VS  L+NF+G +E SRT AVK+IW YIKL+NLQNP NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Subjt:  TGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.5e-3254.55Show/hide
Query:  VFRGCRALLAP-SKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKL
        VFRG R+LLAP S++++++ +A  T    +K  +K+K K    SD+ A   P         R TGI KV  VSP L+ FLG  E SRTDA+K IW+YIK 
Subjt:  VFRGCRALLAP-SKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKL

Query:  HNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVK
        H+LQNPA+KREIFCD+ LK IFEG++KVGFLEI KLL+ HFVK
Subjt:  HNLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein2.5e-2246.09Show/hide
Query:  TAAAKSKTTSKSKEKAPPSSDT----------AAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFC
        TA  +S   S S  +  P+  T          AAAA+  P    +   P GI+K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ+P NKR+I C
Subjt:  TAAAKSKTTSKSKEKAPPSSDT----------AAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIFC

Query:  DDKLKAIFEGREKVGFLEIGKLLARHFV
        D+KLK IFEG+E+VGFLEI KL+  HF+
Subjt:  DDKLKAIFEGREKVGFLEIGKLLARHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCCTCAGCAGCCGTTCCCGCCGCTTCCGGTACCGCGGCAGC
CAAATCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGCTCCGATACTGCTGCTGCAGCCGCGCCCAAGCCGAAAGTCAAAGGGGAAATGACTCGACCGACGG
GGATTTTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGAGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCAT
AACCTTCAGAATCCTGCTAACAAAAGAGAGATCTTCTGCGACGATAAACTCAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATTGGAAAATTGCTCGC
TCGCCATTTCGTGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCCTCAGCAGCCGTTCCCGCCGCTTCCGGTACCGCGGCAGC
CAAATCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGCTCCGATACTGCTGCTGCAGCCGCGCCCAAGCCGAAAGTCAAAGGGGAAATGACTCGACCGACGG
GGATTTTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGAGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCAT
AACCTTCAGAATCCTGCTAACAAAAGAGAGATCTTCTGCGACGATAAACTCAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATTGGAAAATTGCTCGC
TCGCCATTTCGTGAAGAACTGA
Protein sequenceShow/hide protein sequence
MSSGFSNGIRVFRGCRALLAPSKSSAAVPAASGTAAAKSKTTSKSKEKAPPSSDTAAAAAPKPKVKGEMTRPTGILKVAQVSPALSNFLGVSEASRTDAVKQIWSYIKLH
NLQNPANKREIFCDDKLKAIFEGREKVGFLEIGKLLARHFVKN