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Lag0020955 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0020955
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationchr7:3391552..3392383
RNA-Seq ExpressionLag0020955
SyntenyLag0020955
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047244.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]6.0e-0441.82Show/hide
Query:  PVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        PVF+G +P+SWLFRAE Y +IH+L++ E ++ + + +  LA H  R +  R + L
Subjt:  PVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

KAA0056478.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.5e-0440.68Show/hide
Query:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        ++E PVF G +PNSWLFRAE Y +IH+L++ E ++ + + +   A H  R +  R + L
Subjt:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-0435.53Show/hide
Query:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        T + E   + N  S   ++E PVFIG +P SWLFRAE Y +IH+L E E ++ + + +   A +  R +  R + +
Subjt:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

TYK01280.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-0432.69Show/hide
Query:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLE-CSGILYRHRK----LVVDMMGQGLIMEAIKMGLTSSG
        +LE PVF G NP SW++RAEHY EI++LA+ E +  A + + S A +  R   NR +++  E     ++ H K      +  M + ++++A  +GL ++ 
Subjt:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLE-CSGILYRHRK----LVVDMMGQGLIMEAIKMGLTSSG

Query:  KASL
        +A +
Subjt:  KASL

XP_038891356.1 uncharacterized protein LOC120080793 isoform X1 [Benincasa hispida]4.6e-0459.46Show/hide
Query:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAA
        RLE P+F G NP SW++RAEHYLEIH+L++ E +  A
Subjt:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAA

TrEMBL top hitse value%identityAlignment
A0A5A7TWB1 Transposon Tf2-1 polyprotein isoform X12.9e-0441.82Show/hide
Query:  PVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        PVF+G +P+SWLFRAE Y +IH+L++ E ++ + + +  LA H  R +  R + L
Subjt:  PVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

A0A5A7UN05 Transposon Tf2-1 polyprotein isoform X11.7e-0440.68Show/hide
Query:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        ++E PVF G +PNSWLFRAE Y +IH+L++ E ++ + + +   A H  R +  R + L
Subjt:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

A0A5A7V5H5 Ty3/gypsy retrotransposon protein2.9e-0435.53Show/hide
Query:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        T + E   + N  S   ++E PVFIG +P SWLFRAE Y +IH+L E E ++ + + +   A +  R +  R + +
Subjt:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

A0A5A7VJA0 Ty3/gypsy retrotransposon protein2.9e-0435.53Show/hide
Query:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL
        T + E   + N  S   ++E PVFIG +P SWLFRAE Y +IH+L E E ++ + + +   A +  R +  R + +
Subjt:  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL

A0A5D3BQE6 Retrotransposon protein2.2e-0432.69Show/hide
Query:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLE-CSGILYRHRK----LVVDMMGQGLIMEAIKMGLTSSG
        +LE PVF G NP SW++RAEHY EI++LA+ E +  A + + S A +  R   NR +++  E     ++ H K      +  M + ++++A  +GL ++ 
Subjt:  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLE-CSGILYRHRK----LVVDMMGQGLIMEAIKMGLTSSG

Query:  KASL
        +A +
Subjt:  KASL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGGATGAACTCGTTGATAAATCTAACTCTGAGGAGGGAGCAACACTTCAGCCCAAACCCTGTGTCAATTGCAGCAAGATTGGAAACACCTGTGTTTATTGGAGT
GAACCCCAACTCATGGCTTTTTCGAGCAGAACATTACTTAGAAATTCATCAGCTTGCGGAATGGGAAAATATTATTGCGGCAAATATGTTGTGGACTAGTCTTGCTGGTC
ACATAACTAGAAAAGAACCAAATCGTGGGCGGATTTTAAAGCTAGAATGTTCTGGCATTTTATATCGTCACAGGAAGTTGGTCGTTGATATGATGGGCCAAGGCTTAATT
ATGGAAGCTATTAAGATGGGCCTAACAAGTTCGGGTAAGGCAAGTCTATCGAAAGCCAGGAAGGCTGGTACGAAACCTGAAGACCCTTCCCCCTTGCTTGGCATAACCTT
ACCAAAAAAGGAAGGAACGAGAAAAAAGAAATTCAACTCTCCAAAGTTGACTGCCATTGAATTCCTAGCTAAGAGCGAAAAATACAGTGAAAGGCAAATGAGTCTACAAG
GTTGCGACTGTCTCCCTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGGATGAACTCGTTGATAAATCTAACTCTGAGGAGGGAGCAACACTTCAGCCCAAACCCTGTGTCAATTGCAGCAAGATTGGAAACACCTGTGTTTATTGGAGT
GAACCCCAACTCATGGCTTTTTCGAGCAGAACATTACTTAGAAATTCATCAGCTTGCGGAATGGGAAAATATTATTGCGGCAAATATGTTGTGGACTAGTCTTGCTGGTC
ACATAACTAGAAAAGAACCAAATCGTGGGCGGATTTTAAAGCTAGAATGTTCTGGCATTTTATATCGTCACAGGAAGTTGGTCGTTGATATGATGGGCCAAGGCTTAATT
ATGGAAGCTATTAAGATGGGCCTAACAAGTTCGGGTAAGGCAAGTCTATCGAAAGCCAGGAAGGCTGGTACGAAACCTGAAGACCCTTCCCCCTTGCTTGGCATAACCTT
ACCAAAAAAGGAAGGAACGAGAAAAAAGAAATTCAACTCTCCAAAGTTGACTGCCATTGAATTCCTAGCTAAGAGCGAAAAATACAGTGAAAGGCAAATGAGTCTACAAG
GTTGCGACTGTCTCCCTACCTGA
Protein sequenceShow/hide protein sequence
MIGMNSLINLTLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLECSGILYRHRKLVVDMMGQGLI
MEAIKMGLTSSGKASLSKARKAGTKPEDPSPLLGITLPKKEGTRKKKFNSPKLTAIEFLAKSEKYSERQMSLQGCDCLPT