CuGenDBv2

Gene ID	Lag0021034
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Beta-amylase
Genome location	chr7:4114648..4115028
RNA-Seq Expression	Lag0021034
Synteny	Lag0021034
Gene Ontology terms	GO:0000272 - polysaccharide catabolic process (biological process) GO:0016161 - beta-amylase activity (molecular function) GO:0102229 - amylopectin maltohydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582430.1 Beta-amylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.7e-52

87.9

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPAS LRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

XP_022924792.1 beta-amylase 1, chloroplastic-like [Cucurbita moschata]

6.7e-52

87.9

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPAS LRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

XP_022980262.1 beta-amylase 1, chloroplastic-like [Cucurbita maxima]

2.3e-52

88.71

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPASALRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

XP_023526944.1 beta-amylase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.3e-52

88.71

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPASALRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

XP_038896534.1 beta-amylase 1, chloroplastic-like [Benincasa hispida]

1.3e-52

89.52

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MALSITHQIGALAGTPV SE  ++SAGEA AAVNT  LRKSPAS LRCRVQRT+GVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEVREYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGE+GKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L480 Beta-amylase

1.4e-50

89.43

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MALSITHQIGALAGTPV SEAS+ SAGEA  AVNT  LRKS AS LRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTM
         GE+GK KGVPVYVMMPLDSVTM
Subjt:  GGERGKGKGVPVYVMMPLDSVTM

A0A1S3AWG6 Beta-amylase

2.1e-51

87.9

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MALSITHQIGALAGTP+ SEAS+ SAGEA AAVNT  LRKS +S LRCRVQRT+GVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEVREYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGE+GK KGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

A0A5D3D169 Beta-amylase

2.1e-51

87.9

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MALSITHQIGALAGTP+ SEAS+ SAGEA AAVNT  LRKS +S LRCRVQRT+GVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEVREYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGE+GK KGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

A0A6J1E9Z7 Beta-amylase

3.2e-52

87.9

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPAS LRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

A0A6J1IQX2 Beta-amylase

1.1e-52

88.71

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        MA SITHQIGALAGTPV SE S+ ++GEA AAVN   LRKSPASALRCRVQRTDGVDALSPP+SPCRSPVLGGIRPDLSVACQAFATEV APTEV+EYKE
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSVTMG
        GGERGKGKGVPVYVMMPLDSVTMG
Subjt:  GGERGKGKGVPVYVMMPLDSVTMG

SwissProt top hits

e value

%identity

Alignment

Q10RZ1 Beta-amylase 2, chloroplastic

9.8e-06

38.84

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE
        M+L++ HQ GA A    V+ A+  +A  A AA   +A   +PA+A   ++Q T  VD    P +P +        PDL +A QA    VE+  E +    
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKE

Query:  GGERGKGKGVPVYVMMPLDSV
        GGE  +  GVPVYVMMPLD+V
Subjt:  GGERGKGKGVPVYVMMPLDSV

Q9LIR6 Beta-amylase 1, chloroplastic

7.2e-17

46.51

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATE--VEAPTEVREY
        MAL+++HQ+G LAGTP+ S   ++S   ++ +++  + R     A+  R  +  G D  SPP+    SP+LG  R DLSVAC+AFA E  +    E R Y
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATE--VEAPTEVREY

Query:  KEGGERGK---GKGVPVYVMMPLDSVTMG
        +EGG  GK   G GVPV+VMMPLDSVTMG
Subjt:  KEGGERGK---GKGVPVYVMMPLDSVTMG

Arabidopsis top hits

e value

%identity

Alignment

AT3G23920.1 beta-amylase 1

5.1e-18

46.51

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Query:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATE--VEAPTEVREY
        MAL+++HQ+G LAGTP+ S   ++S   ++ +++  + R     A+  R  +  G D  SPP+    SP+LG  R DLSVAC+AFA E  +    E R Y
Subjt:  MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATE--VEAPTEVREY

Query:  KEGGERGK---GKGVPVYVMMPLDSVTMG
        +EGG  GK   G GVPV+VMMPLDSVTMG
Subjt:  KEGGERGK---GKGVPVYVMMPLDSVTMG

Sequences

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CDS sequence

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ATGGCGTTGAGCATCACGCATCAGATTGGCGCGCTCGCCGGAACTCCGGTAGTCTCAGAAGCGAGTAGCAACTCAGCCGGTGAAGCGATGGCAGCGGTGAATACGACGGC
GTTGAGGAAGTCTCCGGCGTCGGCTCTAAGATGCAGAGTGCAGAGGACGGACGGAGTAGACGCGCTATCGCCGCCGGTGAGTCCGTGCAGATCGCCGGTGTTGGGAGGAA
TACGGCCGGATTTATCGGTGGCTTGCCAAGCGTTCGCGACGGAGGTGGAGGCTCCGACGGAAGTGAGGGAGTACAAGGAAGGAGGTGAGAGAGGGAAGGGGAAAGGAGTG
CCGGTGTACGTGATGATGCCGTTGGACAGTGTGACGATGGGAACACGGTGA

mRNA sequence

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Protein sequence

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MALSITHQIGALAGTPVVSEASSNSAGEAMAAVNTTALRKSPASALRCRVQRTDGVDALSPPVSPCRSPVLGGIRPDLSVACQAFATEVEAPTEVREYKEGGERGKGKGV
PVYVMMPLDSVTMGTR

Lag0021034 (gene) of Sponge gourd (AG-4) v1 genome