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Lag0021076 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021076
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:4431331..4432063
RNA-Seq ExpressionLag0021076
SyntenyLag0021076
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]1.5e-1030.77Show/hide
Query:  IWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIR-CESWSSQGS-----------------------WRPPQQGWWKINMDASWSDSK
        +W  W +RN + H KA P  +   R +E+       L + + SP++  E   S  S                       W  PQ GW K+N+D S+  + 
Subjt:  IWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIR-CESWSSQGS-----------------------WRPPQQGWWKINMDASWSDSK

Query:  KAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADEAEGLALEGFFCLAAL
          GGI  + RDS G+ IFA  K +NR       EL+A VEGL  +L     P   IL+E+D    + +LN    + SE   +  EA+ L       LA  
Subjt:  KAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADEAEGLALEGFFCLAAL

Query:  PPLLVSSI
          +LVS I
Subjt:  PPLLVSSI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.6e-1031.76Show/hide
Query:  IIWHIWSLRNRVNHSKAKPDPQ----AIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS
        I W IW +RN+       P+ +    AI R I       T+L     +     IR    ++   W+PP    WK+N +A+W      GGI WI RD  G 
Subjt:  IIWHIWSLRNRVNHSKAKPDPQ----AIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS

Query:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE
         I A  + I  + ++  +E+ AI EGLR++  +  RP   I +ESDS  AI +L+ + ++ +E   L +E
Subjt:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]4.5e-1032.22Show/hide
Query:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRAS-----PIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIF
        ++W IW+ RN++ HS  +   Q   ++I A  E+K  + EF  +      +  ++      W PP Q  WK+N+DA+W DS  AGG+ WI RDS G FI 
Subjt:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRAS-----PIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIF

Query:  AGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLAD----EAEGLALEGF
        A           +C  LKA+ +   SL  + G    +I +ESD    + I+N  +   +E  ++ +    E E L +EGF
Subjt:  AGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLAD----EAEGLALEGF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.3e-1231.25Show/hide
Query:  WHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKIN
        W IW+ RN V           +I+++       ++  E   S +  ++ +++  W PP    W +N DASWSDS   GGI WI R   G  + AG + + 
Subjt:  WHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKIN

Query:  RKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE
           ++K +E  AI+EGLR+ LT +G   P + IE+DS+   ++LN + E+ ++   + +E
Subjt:  RKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.1e-1132.57Show/hide
Query:  IIWHIWSLRNRV----NHSKAKPDPQAIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS
        I W IW +RN+      HS+ +     I R I       T+L    A+     IR    ++   W+PP    WK+N DA+W      GGI WI RD  G 
Subjt:  IIWHIWSLRNRV----NHSKAKPDPQAIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS

Query:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQ-----ILIESDSSVAIAILNHEAEEFSEARVLADE
         I A  + I  + ++  +E+ AI EGLR++  +  RP  Q     I +ESDS  AI +L+ + ++ +E   L +E
Subjt:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQ-----ILIESDSSVAIAILNHEAEEFSEARVLADE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.3e-1031.76Show/hide
Query:  IIWHIWSLRNRVNHSKAKPDPQ----AIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS
        I W IW +RN+       P+ +    AI R I       T+L     +     IR    ++   W+PP    WK+N +A+W      GGI WI RD  G 
Subjt:  IIWHIWSLRNRVNHSKAKPDPQ----AIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS

Query:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE
         I A  + I  + ++  +E+ AI EGLR++  +  RP   I +ESDS  AI +L+ + ++ +E   L +E
Subjt:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE

A0A6J1D4B6 uncharacterized protein LOC1110171812.2e-1032.22Show/hide
Query:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRAS-----PIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIF
        ++W IW+ RN++ HS  +   Q   ++I A  E+K  + EF  +      +  ++      W PP Q  WK+N+DA+W DS  AGG+ WI RDS G FI 
Subjt:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRAS-----PIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIF

Query:  AGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLAD----EAEGLALEGF
        A           +C  LKA+ +   SL  + G    +I +ESD    + I+N  +   +E  ++ +    E E L +EGF
Subjt:  AGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLAD----EAEGLALEGF

A0A6J1DNV9 uncharacterized protein LOC1110224033.0e-1231.25Show/hide
Query:  WHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKIN
        W IW+ RN V           +I+++       ++  E   S +  ++ +++  W PP    W +N DASWSDS   GGI WI R   G  + AG + + 
Subjt:  WHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKIN

Query:  RKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE
           ++K +E  AI+EGLR+ LT +G   P + IE+DS+   ++LN + E+ ++   + +E
Subjt:  RKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADE

A0A6J1DSV1 uncharacterized protein LOC1110236081.5e-1132.57Show/hide
Query:  IIWHIWSLRNRV----NHSKAKPDPQAIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS
        I W IW +RN+      HS+ +     I R I       T+L    A+     IR    ++   W+PP    WK+N DA+W      GGI WI RD  G 
Subjt:  IIWHIWSLRNRV----NHSKAKPDPQAIIREIEALQENKTHLMEFRASP----IRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGS

Query:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQ-----ILIESDSSVAIAILNHEAEEFSEARVLADE
         I A  + I  + ++  +E+ AI EGLR++  +  RP  Q     I +ESDS  AI +L+ + ++ +E   L +E
Subjt:  FIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQ-----ILIESDSSVAIAILNHEAEEFSEARVLADE

B8AFN2 RNase H domain-containing protein7.5e-1130.77Show/hide
Query:  IWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIR-CESWSSQGS-----------------------WRPPQQGWWKINMDASWSDSK
        +W  W +RN + H KA P  +   R +E+       L + + SP++  E   S  S                       W  PQ GW K+N+D S+  + 
Subjt:  IWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIR-CESWSSQGS-----------------------WRPPQQGWWKINMDASWSDSK

Query:  KAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADEAEGLALEGFFCLAAL
          GGI  + RDS G+ IFA  K +NR       EL+A VEGL  +L     P   IL+E+D    + +LN    + SE   +  EA+ L       LA  
Subjt:  KAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADEAEGLALEGFFCLAAL

Query:  PPLLVSSI
          +LVS I
Subjt:  PPLLVSSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.4e-0625.83Show/hide
Query:  EALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKINRKWDMKC-MELKAIVEGLRSLLTKIG
        E  + N    +  R+  +R E   +   WR P++GW K N D S+ +        W+ RDS GS++ A G+ I RK D     E++A++  ++   +   
Subjt:  EALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKINRKWDMKC-MELKAIVEGLRSLLTKIG

Query:  RPFPQILIESDSSVAIAILN
          + ++  E D+ +   ++N
Subjt:  RPFPQILIESDSSVAIAILN

AT4G29090.1 Ribonuclease H-like superfamily protein1.9e-1128.48Show/hide
Query:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCE-SWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGK
        ++W +W  RN +     + + Q ++R  E   E      E  +   + + + SS G WRPP   W K N DA+W+   +  GI W+ R+  G   + G +
Subjt:  IIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCE-SWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGK

Query:  KINRKWDMKCMELKAIVEGLRSLLTKIGR-PFPQILIESDSSVAIAILNHE
         + +   +K + L+A +E +R  +  + R  +  ++ ESDS V I ILN++
Subjt:  KINRKWDMKCMELKAIVEGLRSLLTKIGR-PFPQILIESDSSVAIAILNHE

AT5G19270.1 unknown protein2.1e-0531.91Show/hide
Query:  SWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAI---VEGLRSLLTKIGRPFPQILIESDSSVAIAIL
        +W PP  G  K N++A W ++    G+ WIARD  G  ++       R  +    EL+ I   V+ LR L  +       ++I SD   AIA L
Subjt:  SWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKINRKWDMKCMELKAI---VEGLRSLLTKIGRPFPQILIESDSSVAIAIL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0420.81Show/hide
Query:  IIWHIWSLRNRV--NHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGG
        ++W IW   N +  NH++ K      +   +  +     +   + +  R    S    W PP +   K N DAS  +     G+ WI R+S G+ I  G 
Subjt:  IIWHIWSLRNRV--NHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGG

Query:  KKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILN
         K   +   +  E   ++  +++     G    +++ E D+     ++N
Subjt:  KKINRKWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCGAGACCTGCCGGATTATTTGGCACATTTGGTCCCTCAGAAACAGGGTTAACCATTCAAAGGCTAAGCCAGATCCTCAAGCGATTATCAGAGAAATTGAAGC
TTTGCAAGAGAACAAAACGCACCTCATGGAGTTCAGAGCTTCTCCGATCAGATGTGAGAGCTGGTCGAGTCAGGGGTCGTGGAGACCTCCTCAGCAAGGTTGGTGGAAGA
TAAACATGGATGCTTCCTGGTCAGACTCCAAAAAAGCGGGGGGTATCAGGTGGATTGCTCGTGACTCGGGCGGGTCTTTCATCTTCGCCGGAGGGAAAAAAATCAACAGA
AAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAACCAAAATTGGTAGGCCTTTCCCGCAGATCCTCATCGAATCAGACTCCTC
TGTTGCGATCGCCATTCTGAATCATGAAGCCGAAGAGTTTTCTGAAGCGCGGGTTCTGGCAGACGAAGCAGAGGGATTGGCGCTGGAAGGTTTTTTTTGTTTGGCTGCTT
TGCCTCCTTTGTTGGTTTCTTCGATTTTCTCGGAGAAAGAAGTGGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCGAGACCTGCCGGATTATTTGGCACATTTGGTCCCTCAGAAACAGGGTTAACCATTCAAAGGCTAAGCCAGATCCTCAAGCGATTATCAGAGAAATTGAAGC
TTTGCAAGAGAACAAAACGCACCTCATGGAGTTCAGAGCTTCTCCGATCAGATGTGAGAGCTGGTCGAGTCAGGGGTCGTGGAGACCTCCTCAGCAAGGTTGGTGGAAGA
TAAACATGGATGCTTCCTGGTCAGACTCCAAAAAAGCGGGGGGTATCAGGTGGATTGCTCGTGACTCGGGCGGGTCTTTCATCTTCGCCGGAGGGAAAAAAATCAACAGA
AAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAACCAAAATTGGTAGGCCTTTCCCGCAGATCCTCATCGAATCAGACTCCTC
TGTTGCGATCGCCATTCTGAATCATGAAGCCGAAGAGTTTTCTGAAGCGCGGGTTCTGGCAGACGAAGCAGAGGGATTGGCGCTGGAAGGTTTTTTTTGTTTGGCTGCTT
TGCCTCCTTTGTTGGTTTCTTCGATTTTCTCGGAGAAAGAAGTGGGTGGTTAG
Protein sequenceShow/hide protein sequence
MKIETCRIIWHIWSLRNRVNHSKAKPDPQAIIREIEALQENKTHLMEFRASPIRCESWSSQGSWRPPQQGWWKINMDASWSDSKKAGGIRWIARDSGGSFIFAGGKKINR
KWDMKCMELKAIVEGLRSLLTKIGRPFPQILIESDSSVAIAILNHEAEEFSEARVLADEAEGLALEGFFCLAALPPLLVSSIFSEKEVGG