; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021098 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021098
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSplicing factor subunit
Genome locationchr7:4611751..4615509
RNA-Seq ExpressionLag0021098
SyntenyLag0021098
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]1.9e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_021593515.1 uncharacterized protein At4g14342 [Manihot esculenta]2.5e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_022979581.1 uncharacterized protein At4g14342-like, partial [Cucurbita maxima]1.7e-4493.62Show/hide
Query:  RICLKSTMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        RIC KS  QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP L YFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  RICLKSTMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_031271203.1 uncharacterized protein At4g14342 isoform X1 [Pistacia vera]1.9e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_038719409.1 uncharacterized protein At4g14342 [Tripterygium wilfordii]2.5e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A218VSR0 Splicing factor subunit9.3e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1EJ56 Splicing factor subunit9.3e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1IBJ4 Splicing factor subunit9.3e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1IR69 uncharacterized protein At4g14342-like8.5e-4593.62Show/hide
Query:  RICLKSTMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        RIC KS  QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP L YFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  RICLKSTMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6P4A3S7 Splicing factor subunit9.3e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143425.3e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 51.7e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 51.7e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233255.3e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 55.3e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFA+AENES  R R+N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 103.8e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 103.8e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGGAGAGAAAGATGAAGCCTAAAGCGAATTTAACATTTGACCAGACCTTTAGCTCGCGCCTTTTCCCTCTGCTTCGTCTCTTCCGTCGAATCTGCCTCAAATC
GACCATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCCAAATATGTGGGAACCGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGA
ACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTATCCCATTCTAGCATACTTCGCATTAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAG
AAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGGAGAGAAAGATGAAGCCTAAAGCGAATTTAACATTTGACCAGACCTTTAGCTCGCGCCTTTTCCCTCTGCTTCGTCTCTTCCGTCGAATCTGCCTCAAATC
GACCATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCCAAATATGTGGGAACCGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGA
ACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTATCCCATTCTAGCATACTTCGCATTAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAG
AAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA
Protein sequenceShow/hide protein sequence
MASERKMKPKANLTFDQTFSSRLFPLLRLFRRICLKSTMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFALAENESIGRERYNFMQ
KMLLPCGLPPEREDD