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Lag0021111 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021111
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:4750004..4750489
RNA-Seq ExpressionLag0021111
SyntenyLag0021111
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024036832.1 LRR receptor-like serine/threonine-protein kinase IOS1 [Citrus clementina]2.3e-0936.51Show/hide
Query:  TSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHISRT
        + G+G V+RD  G + A   + +L+  S   AEA AVL GL+LAR  DV +L I SD L ++ ++N      + I  TI  I++  ++F  V  +HI R 
Subjt:  TSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHISRT

Query:  FNVFAHRVARLGF-SSSPCIWSQDYP
         N  AH +A+     +SPC+W  + P
Subjt:  FNVFAHRVARLGF-SSSPCIWSQDYP

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.2e-1034.78Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES
        ++ DA+      ++G+G V+RD  G + A   + +L+  S   AEA AVL GL+LAR  DV +L I SD L ++ ++N      + I  TI  I++  + 
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES

Query:  FLNVDFQHISRTFNVFAHRVARLGFSS-SPCIWSQDYP
        F  V   HI R  N  AH +A++     SPC+W  + P
Subjt:  FLNVDFQHISRTFNVFAHRVARLGFSS-SPCIWSQDYP

XP_027152612.1 uncharacterized protein LOC113752740 [Coffea eugenioides]6.2e-1032.17Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES
        M+TDA +   +  +G+G++ +D  G + A  +     T    E EA+A+   L  A E ++ +L ILSD   +++ IN  C+    +   I +IR +  S
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES

Query:  FLNVDFQHISRTFNVFAHRVARLGFSSSPCI-WSQDYPHWMVK
        F    F HI R  N+ +HR+A+L  S    I W Q +P W+ K
Subjt:  FLNVDFQHISRTFNVFAHRVARLGFSSSPCI-WSQDYPHWMVK

XP_042950154.1 uncharacterized protein LOC122282268 [Carya illinoinensis]5.2e-0932.59Show/hide
Query:  DASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLN
        DA+I  +    GIGV++RD  GL+ A   SS  +  +PL  EAV  L    L  EL +  + +  D+L ++  +  + K  +     I +++S+      
Subjt:  DASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLN

Query:  VDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP
           QH  R FNVFAH +A    + S  CI  +DYP
Subjt:  VDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP

XP_042983235.1 uncharacterized protein LOC122312641 [Carya illinoinensis]3.1e-0931.85Show/hide
Query:  DASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLN
        DA+I       GIGV++RD  GL+ A   SS  +T  PL  EA A L    L  EL + ++ +  D+L ++  + G  +  + +   I +++S+   F  
Subjt:  DASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLN

Query:  VDFQHISRTFNVFAHRVARLG-FSSSPCIWSQDYP
            H+ R  NV AH +A+     S  CI  +DYP
Subjt:  VDFQHISRTFNVFAHRVARLG-FSSSPCIWSQDYP

TrEMBL top hitse value%identityAlignment
A0A2I4ERH4 uncharacterized protein LOC1089920105.6e-0931.21Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGG---LLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSI
        ++ D +   +   +GIG VLRD  G   +  A++  +SL   +  E E +A+L GL+L   L + +L+I SDSL ++N  +   +  A +   I E+R +
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGG---LLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSI

Query:  QESFLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP
           F   +  H++R+ N+  H +A+LG S S   +W   YP
Subjt:  QESFLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP

A0A5C7IIT4 Uncharacterized protein9.6e-0934.06Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES
        ++TDA++    + +GIGVV+RD  G + A    S      P   EAVAVL G RLA E  +C  +I SDSL+++N+IN    + A I   + +I ++  +
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES

Query:  FLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP
                + R  N  AH +A+L  S     +W +D P
Subjt:  FLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYP

A0A6J1CNR4 uncharacterized protein LOC1110129503.3e-0933.58Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIW--EIRSIQ
        ++ D +   +Q  + IG+V R++ G + A  +      + PL AE++A+LEGLRLA  L++  +   SDSL LIN++  +  +  C  + +W  +IR + 
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIW--EIRSIQ

Query:  ESFLNVDFQHISRTFNVFAHRVA--RLGFSSSPCIWS
         +F++ +F H+ R+ N  A RVA   +GF  +PC W+
Subjt:  ESFLNVDFQHISRTFNVFAHRVA--RLGFSSSPCIWS

A0A6J1DZK3 uncharacterized protein LOC1110249687.4e-0930.34Show/hide
Query:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES
        M+TDA++  +++ SG+GV+LR+    +        +V  +PL A+ +A+ EGL LA  L V  + + +DSL  +N+I  K   +    + + +IR+    
Subjt:  MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQES

Query:  FLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYPHWMVKLS
        F  + FQH+ R  N  A+ + R   S     +W  D+P W+ +L+
Subjt:  FLNVDFQHISRTFNVFAHRVARLGFS-SSPCIWSQDYPHWMVKLS

A0A7W1K5H0 Ribonuclease HI family protein9.6e-0936.51Show/hide
Query:  MHTDASIMGNQQTSGIGVVLR-DKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVE-ACIATTIWEIRSIQ
        +H D +  GN   +GIG V+R  +G +L  V     + TN+   AE  AVLEGLR AR+L    + + SDS  L+  ++G+ +V+   +     E+RS+ 
Subjt:  MHTDASIMGNQQTSGIGVVLR-DKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVE-ACIATTIWEIRSIQ

Query:  ESFLNVDFQHISRTFNVFAHRVARLG
         +F  V F+H+ R FN  A R+A  G
Subjt:  ESFLNVDFQHISRTFNVFAHRVARLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.6e-0629.66Show/hide
Query:  LRDKGGLLKAVQNSSSLVTN---------SPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHIS
        L   G + +A  +S   +T          SPL AEA A+   +  A +L+  +L +LSDS ++++ +N    +       + EIRSI+  F ++ FQ I 
Subjt:  LRDKGGLLKAVQNSSSLVTN---------SPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHIS

Query:  RTFNVFAHRVARLGFSSS
        R  N  A   A+L    S
Subjt:  RTFNVFAHRVARLGFSSS

AT3G09510.1 Ribonuclease H-like superfamily protein5.4e-0430.7Show/hide
Query:  TNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHISRTFNVFAHRVARLGFSSSPCI-WSQDY
        T++PLEAE  A+L  L+         + +  D  TLIN+ING     + +A  + +I      F ++ F  I R  N  AH +A+ G + S     S   
Subjt:  TNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHISRTFNVFAHRVARLGFSSSPCI-WSQDY

Query:  PHWMVKLSLQERYF
        P W+      +RYF
Subjt:  PHWMVKLSLQERYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACACGGATGCATCTATTATGGGGAATCAGCAAACATCTGGTATTGGAGTGGTTTTGCGAGATAAAGGGGGCTTGCTTAAGGCGGTGCAGAATTCATCATCTTTGGT
GACCAACTCTCCTTTGGAAGCGGAAGCAGTGGCCGTTCTTGAAGGCTTGCGACTGGCTAGGGAATTGGATGTGTGTAACCTAACTATTTTGTCCGACTCCTTGACACTGA
TAAATATAATTAATGGAAAATGTAAGGTGGAGGCATGTATTGCTACGACTATCTGGGAGATTAGATCGATCCAGGAATCCTTTCTGAATGTGGACTTTCAGCATATTAGT
CGCACATTTAATGTGTTTGCCCATCGTGTAGCTCGGTTAGGTTTTTCTTCTTCACCATGTATCTGGTCACAAGACTACCCTCACTGGATGGTCAAATTATCGCTTCAGGA
GCGATATTTCTTTGTTCCCCAATGGGGACCCCTTCTTTCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACACGGATGCATCTATTATGGGGAATCAGCAAACATCTGGTATTGGAGTGGTTTTGCGAGATAAAGGGGGCTTGCTTAAGGCGGTGCAGAATTCATCATCTTTGGT
GACCAACTCTCCTTTGGAAGCGGAAGCAGTGGCCGTTCTTGAAGGCTTGCGACTGGCTAGGGAATTGGATGTGTGTAACCTAACTATTTTGTCCGACTCCTTGACACTGA
TAAATATAATTAATGGAAAATGTAAGGTGGAGGCATGTATTGCTACGACTATCTGGGAGATTAGATCGATCCAGGAATCCTTTCTGAATGTGGACTTTCAGCATATTAGT
CGCACATTTAATGTGTTTGCCCATCGTGTAGCTCGGTTAGGTTTTTCTTCTTCACCATGTATCTGGTCACAAGACTACCCTCACTGGATGGTCAAATTATCGCTTCAGGA
GCGATATTTCTTTGTTCCCCAATGGGGACCCCTTCTTTCTGAATGA
Protein sequenceShow/hide protein sequence
MHTDASIMGNQQTSGIGVVLRDKGGLLKAVQNSSSLVTNSPLEAEAVAVLEGLRLARELDVCNLTILSDSLTLINIINGKCKVEACIATTIWEIRSIQESFLNVDFQHIS
RTFNVFAHRVARLGFSSSPCIWSQDYPHWMVKLSLQERYFFVPQWGPLLSE