CuGenDBv2

Gene ID	Lag0021192
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Genome location	chr7:5427014..5427839
RNA-Seq Expression	Lag0021192
Synteny	Lag0021192
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR034569 - Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049312.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa]

2.9e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

KAG7028861.1 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-59

94.83

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQGFIS LFLP VAA MYFNVPGEY+YIGAAVFTIVFCIIE+DKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GDLWDFTVKNDDITKR
Subjt:  GDLWDFTVKNDDITKR

XP_004134105.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus]

2.9e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

XP_008438595.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo]

2.9e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

XP_022974431.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima]

6.5e-59

94.83

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQGFIS LFLP VAA MYFNVPGEY+YIGAAVFTIVFCIIE+DKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GDLWDFTVKNDDITKR
Subjt:  GDLWDFTVKNDDITKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8H7 Uncharacterized protein

1.4e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

A0A1S3AXF4 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2

1.4e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

A0A5A7U0K2 Photosynthetic NDH subunit of subcomplex B 5

1.4e-59

96.52

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQG IS LFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIEIDKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITK
        GDLWDFTVKNDDITK
Subjt:  GDLWDFTVKNDDITK

A0A6J1GAI7 photosynthetic NDH subunit of subcomplex B 5, chloroplastic

3.1e-59

94.83

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQGFIS LFLP VAA MYFNVPGEY+YIGAAVFTIVFCIIE+DKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GDLWDFTVKNDDITKR
Subjt:  GDLWDFTVKNDDITKR

A0A6J1IBC3 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1

3.1e-59

94.83

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAVGPPTGFQGFIS LFLP VAA MYFNVPGEY+YIGAAVFTIVFCIIE+DKPDQPHNFEP+IYNMERGARDKLISDYNTMDIWEFNEKY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GDLWDFTVKNDDITKR
Subjt:  GDLWDFTVKNDDITKR

SwissProt top hits

e value

%identity

Alignment

Q9FG89 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

8.8e-51

75.86

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Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAV    GFQG IS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCIIE+DKPDQPHNFEP+IY +ERGARDKLI+DYNTM IW+FN+KY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GD+WDFT++ DDI  R
Subjt:  GDLWDFTVKNDDITKR

Arabidopsis top hits

e value

%identity

Alignment

AT5G43750.1 NAD(P)H dehydrogenase 18

6.3e-52

75.86

Show/hide

Query:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY
        TFWGAIADDIAAV    GFQG IS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCIIE+DKPDQPHNFEP+IY +ERGARDKLI+DYNTM IW+FN+KY
Subjt:  TFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGARDKLISDYNTMDIWEFNEKY

Query:  GDLWDFTVKNDDITKR
        GD+WDFT++ DDI  R
Subjt:  GDLWDFTVKNDDITKR

Sequences

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CDS sequence

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ATGATCAGTAGGTTGTTGATCGAACCTTCTGGATCATTGAAGACTTGGGCTTCGGCTTCTTGGACAGACTTGAGCTATCTGCATCGAACATTCTGGGGAGCCATTGCAGA
TGATATTGCCGCAGTTGGACCCCCTACAGGCTTTCAGGGCTTCATCTCATTGCTCTTCCTACCAGCAGTTGCTGCTGGAATGTACTTCAATGTCCCGGGAGAGTATCTAT
ACATTGGAGCAGCTGTATTCACAATAGTATTTTGCATAATTGAAATAGACAAGCCAGACCAACCACACAACTTCGAACCTGAGATATATAACATGGAGCGGGGGGCTCGT
GACAAATTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTGAAGAACGATGATATTACAAAGAGATGA

mRNA sequence

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Protein sequence

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MISRLLIEPSGSLKTWASASWTDLSYLHRTFWGAIADDIAAVGPPTGFQGFISLLFLPAVAAGMYFNVPGEYLYIGAAVFTIVFCIIEIDKPDQPHNFEPEIYNMERGAR
DKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR

Lag0021192 (gene) of Sponge gourd (AG-4) v1 genome