CuGenDBv2

Gene ID	Lag0021258
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	pre-rRNA-processing protein TSR2 homolog
Genome location	chr7:5940264..5943828
RNA-Seq Expression	Lag0021258
Synteny	Lag0021258
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005634 - nucleus (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR019398 - Pre-rRNA-processing protein TSR2

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8650358.1 hypothetical protein Csa_010013 [Cucumis sativus]

1.3e-43

89.22

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ I 
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL

Query:  DH
         H
Subjt:  DH

XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]

1.4e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]

8.2e-43

88.12

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ + 
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL

Query:  D
        +
Subjt:  D

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]

1.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]

6.3e-43

88.12

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ + 
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL

Query:  D
        +
Subjt:  D

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7I9 Uncharacterized protein

6.8e-43

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X2

8.9e-43

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X1

4.0e-43

88.12

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ + 
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAIL

Query:  D
        +
Subjt:  D

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X2

8.9e-43

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHET+LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog

8.9e-43

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        MEP D LASTNYKAGS+SGLQ AISSVFSRWDGLQMAI NQWGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHE++LLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

SwissProt top hits

e value

%identity

Alignment

Q3T090 Pre-rRNA-processing protein TSR2 homolog

6.0e-04

33.33

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Query:  AISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        A+ +    W  LQ+A+ N +GG  S +K+  L   V  +F ++   L ++++E+ L E M+  F+T +EDGS+ Q
Subjt:  AISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog

1.6e-04

34.67

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Query:  AISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        A+ +    W  LQ+A+ N +GG  S +K+  L   V  +F  +   L +E++E+ L E M   F+T +EDGS+ Q
Subjt:  AISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region

1.0e-19

61.25

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Query:  SGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ
        S LQ  I  + SRW GLQMA+ NQWGG DS +KS  LA ++F   SQS   + VE++ENLLHE++LLSFNTEIEDGSIE+
Subjt:  SGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQ

Sequences

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CDS sequence

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ATGGAGCCAATTGATAGATTAGCCTCAACCAATTACAAGGCAGGATCTATCTCCGGCCTCCAAATGGCCATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTAATAACCAATGGGGCGGTCGCGATTCTCACCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGAAGATC
TAGAAAATTTGCTCCATGAAACCATGCTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGCAATTTTGGACCACCCCGATGTACAAGGAGCTGACGAG
GACAATCGGGGAGAAATCGGGCTGGATACGGGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAGGCCGAAGGGGTCGGGTTTTTTACCCGACCCCATGCTCGGCCT
CGGCCATGGGCTGAGGCCGACCCTCGGCCCGCTCGTGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGCATCGGAGCCG
GTGTGGCGAGCACCACACCGGTGTGCAGGTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTCCTCT
GGCCAAAATCGACCATCAACAGTGGTTTTCATCATTCTCAATGAAATATTTGAATTCTGA

mRNA sequence

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Protein sequence

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MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETMLLSFNTEIEDGSIEQAILDHPDVQGADE
DNRGEIGLDTGQGGGAGKRDGPRPKGSGFLPDPMLGLGHGLRPTLGPLVRAEPVRSRLVPTASGCPGFACIGAGVASTTPVCRLLSCRPRLPPSSTNLPLVAREGQVSSS
GQNRPSTVVFIILNEIFEF

Lag0021258 (gene) of Sponge gourd (AG-4) v1 genome