; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021277 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021277
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:6048044..6051949
RNA-Seq ExpressionLag0021277
SyntenyLag0021277
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]7.4e-2042.07Show/hide
Query:  GNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEA
        G  A +K E   +     +      V  QK    +F++YTP T   EQVL  I+D  LLK PE +++ P++R+K +YC+FHRDHGHAT +C  L++E+E 
Subjt:  GNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEA

Query:  LIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEE
        LIRKGY K +V +D    P   +  K   +P  EI+TI+GGS+E+
Subjt:  LIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEE

XP_030945650.1 uncharacterized protein LOC115970119 [Quercus lobata]1.9e-2043.17Show/hide
Query:  ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLF
        AR  +YT L    EQVL  I+D   LK PEK+R DP++RN+NKYC FHRDHGH   EC  L+ +IE LIR+G  K F+G D     +     +    PL 
Subjt:  ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLF

Query:  EIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTGRLKQRR
        EI+ I+GGSS  G ++  ++  + + +S  L+GR  + R
Subjt:  EIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTGRLKQRR

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]3.0e-2142.11Show/hide
Query:  KSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK
        K   D+R            R  +YTPL A  EQVL  I+D   LK PEKL+ DP++RN+NKYC FHRDHGH T EC  L+ +IE LIR+G  +GF+G D+
Subjt:  KSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDK

Query:  SKRPLPADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTGR
                       PL EI+ I+GGSS  G ++  ++  + + ++  LTGR
Subjt:  SKRPLPADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTGR

XP_030958759.1 uncharacterized protein LOC115980670 [Quercus lobata]9.6e-2045.16Show/hide
Query:  DQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRP
        +++ R +R       R   + PL A F QVL  I+D   LK PEK++ DP+ RNKNKYC FHRDHGH   EC  L+ +IE LIR+G  + FVG D     
Subjt:  DQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRP

Query:  LPADQGKGGANPLFEIQTILGGSS
        L     K    PL EI+ I+GG+S
Subjt:  LPADQGKGGANPLFEIQTILGGSS

XP_030970531.1 uncharacterized protein LOC115990904 [Quercus lobata]1.9e-2035.71Show/hide
Query:  EDVGQIRLEHSSANGRGRAEVQSQKKACRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRP
        E      L HS+ N     +    KK  RS    T    +     R K     +    +  +   +VRNQ     +YTPL A  EQVL  I+D   LK P
Subjt:  EDVGQIRLEHSSANGRGRAEVQSQKKACRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRP

Query:  EKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSG
        +K++ DP++RN+NKYC FHRDHGH T EC  L+ +IE LIR+G  +GF+G D+          +    PL EI+ I+GGSS  G ++  ++  + + +S 
Subjt:  EKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSG

Query:  TLTGRLKQRR
         L+GR  + R
Subjt:  TLTGRLKQRR

TrEMBL top hitse value%identityAlignment
A0A2N9HH57 Ribonuclease H1.7e-1739.86Show/hide
Query:  RPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPL-
        +PR+ +       +F  +TPL    +++L  IQD   L+ P K+RSDP+ R KN YC FHRDHGH T EC+ L+++IE LIR+G  + +V    + RP  
Subjt:  RPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSKRPL-

Query:  -PADQGKGGAN---PLFEIQTILGGSSEEGGAAHGEQK
         PA + +   N   P+ EI+TI+GG +  GG +   +K
Subjt:  -PADQGKGGAN---PLFEIQTILGGSSEEGGAAHGEQK

A0A2N9J908 Retrotrans_gag domain-containing protein9.7e-1845.45Show/hide
Query:  QKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-RPLPADQGKG---
        Q  R   +TPL  S +QVL  IQD    K PEKLRS P RR+K+ YC FHRDHGH T +C  L+++IEALIR+G  K FV  D  + RP   ++ K    
Subjt:  QKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPKGFVGNDKSK-RPLPADQGKG---

Query:  --GANPLFEIQTILGGSSEEGGAAHGEQKIVT
            + + EI+TI+GG +  GGA+   +K  T
Subjt:  --GANPLFEIQTILGGSSEEGGAAHGEQKIVT

A0A6J1DWY0 uncharacterized protein LOC1110252938.8e-1937.33Show/hide
Query:  QKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQL
        ++   G  T     +  +    S  ++R RS +  ++   +F++YTP T   EQVL  I+D  LLK PE++++   +R+K +YC+FHRDHGHAT++C  L
Subjt:  QKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQL

Query:  RDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSE
        ++E+E LIR+GY K +V     + P     G+   +P  EI+TI+GG  E
Subjt:  RDEIEALIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSE

A0A6J1DZ52 uncharacterized protein LOC1110256123.6e-2042.07Show/hide
Query:  GNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEA
        G  A +K E   +     +      V  QK    +F++YTP T   EQVL  I+D  LLK PE +++ P++R+K +YC+FHRDHGHAT +C  L++E+E 
Subjt:  GNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEA

Query:  LIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEE
        LIRKGY K +V +D    P   +  K   +P  EI+TI+GGS+E+
Subjt:  LIRKGYPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEE

A0A7N2N9G0 Reverse transcriptase1.2e-1836.42Show/hide
Query:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPK
        ++ + R K+    R R  R  R    RF  +TPLTA  +QVL  I+D   L  P KL+SDP++R+++KYC FHRDHGH T +C  L+ +IEALIR+G  +
Subjt:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKGYPK

Query:  GFVGNDKSKRPL----PADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTG
         FV  +++  P     P    +    P+ +I+ I+GG++  G +    +  + + ++  LTG
Subjt:  GFVGNDKSKRPL----PADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGTTGAATTATGAGCAATCTGGGTTTGAAAGTACTGAAATTGATGCGTACGAGGAGCTGACAGGACAACCGAGAGGAGATAGGACCAGGAAGGGACCCAGAGG
GAAACCATACCGACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGGCCGAGCATTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACC
ACTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTATCGCTTCCAGCTACCTCGGTCCAGCCTGCTTCGTCCCGAACGCCTCCAAACCCTAGGAGT
CCGAGCAGGTATTTATACCCCTCTTCGTCATCGAAGAAGGGGACCGAAAACTCGATTCTTGACTTCTTTCTCTATTCTCTTGCTGCTCAGTTTCCTGACTTAGGCATCGG
AGGTGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCATTGTTGGTGTCACGTGAAGGGCAGGT
GGATTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGGTCTGTAGGATGGATCGGGTTCAG
AAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGTGCCGAGCCAGACTGGGGTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGACTTTTGTAAGGATCCGTG
TGCCCACGATGCTACGGACCTAACCCAAGAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGACAAAGGAAAAG
GATGTCGGGTAGAAGATGTAGGCCAGATCCGACTTGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCACAAAAAAAAGCCTGCAGAAGTTTGCCGCAA
AAGACAGCGTCGGGTACATACACAGGAAATAATGCTAGGAAAAAGTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCA
AAAAGCCAGATTCGACAGGTATACACCACTAACAGCTTCCTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTAAAACGCCCAGAAAAGTTGAGATCAGACC
CCGATAGGAGGAACAAAAACAAATACTGCATGTTCCACAGAGACCACGGTCATGCAACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGT
TACCCCAAGGGGTTCGTTGGGAACGACAAAAGCAAGAGGCCACTGCCGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTTAGGAGGATC
ATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATTGTTACTTTATGGCGCTCGGGAACATTGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGG
CCGAGCCTTTGAGAGGTCAAGTTATCCCCTTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGTTGAATTATGAGCAATCTGGGTTTGAAAGTACTGAAATTGATGCGTACGAGGAGCTGACAGGACAACCGAGAGGAGATAGGACCAGGAAGGGACCCAGAGG
GAAACCATACCGACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGGCCGAGCATTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACC
ACTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTATCGCTTCCAGCTACCTCGGTCCAGCCTGCTTCGTCCCGAACGCCTCCAAACCCTAGGAGT
CCGAGCAGGTATTTATACCCCTCTTCGTCATCGAAGAAGGGGACCGAAAACTCGATTCTTGACTTCTTTCTCTATTCTCTTGCTGCTCAGTTTCCTGACTTAGGCATCGG
AGGTGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCATTGTTGGTGTCACGTGAAGGGCAGGT
GGATTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGGTCTGTAGGATGGATCGGGTTCAG
AAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGTGCCGAGCCAGACTGGGGTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGACTTTTGTAAGGATCCGTG
TGCCCACGATGCTACGGACCTAACCCAAGAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGACAAAGGAAAAG
GATGTCGGGTAGAAGATGTAGGCCAGATCCGACTTGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCACAAAAAAAAGCCTGCAGAAGTTTGCCGCAA
AAGACAGCGTCGGGTACATACACAGGAAATAATGCTAGGAAAAAGTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCA
AAAAGCCAGATTCGACAGGTATACACCACTAACAGCTTCCTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTAAAACGCCCAGAAAAGTTGAGATCAGACC
CCGATAGGAGGAACAAAAACAAATACTGCATGTTCCACAGAGACCACGGTCATGCAACTCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAAAAGGT
TACCCCAAGGGGTTCGTTGGGAACGACAAAAGCAAGAGGCCACTGCCGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTTAGGAGGATC
ATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATTGTTACTTTATGGCGCTCGGGAACATTGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGGCCGAGG
CCGAGCCTTTGAGAGGTCAAGTTATCCCCTTCCAATGA
Protein sequenceShow/hide protein sequence
MGELNYEQSGFESTEIDAYEELTGQPRGDRTRKGPRGKPYRRAGPTWPDPYGRPRPWAEAEHYGRPRPKAEADHSARLRGPSPFASARPLSLPATSVQPASSRTPPNPRS
PSRYLYPSSSSKKGTENSILDFFLYSLAAQFPDLGIGGGVAYTTPVSSDSCWSCRSRLPQLLQIHCWCHVKGRWIAWPNFGINSWRRLWGRMLASSDRTSVVVCRMDRVQ
KPEGSLGYEQKVPSQTGVDLGMEKADPNFGDFCKDPCAHDATDLTQEPKRTTSRRRENREAAISDQHQEDKGKGCRVEDVGQIRLEHSSANGRGRAEVQSQKKACRSLPQ
KTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTASFEQVLAAIQDTNLLKRPEKLRSDPDRRNKNKYCMFHRDHGHATRECIQLRDEIEALIRKG
YPKGFVGNDKSKRPLPADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKIVTLWRSGTLTGRLKQRRPWEMAEAEPLRGQVIPFQ