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Lag0021293 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021293
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:6190904..6191990
RNA-Seq ExpressionLag0021293
SyntenyLag0021293
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC73134.1 hypothetical protein OsI_07152 [Oryza sativa Indica Group]5.6e-0526.8Show/hide
Query:  WVSELLCTSGNWDEVMIRAHFIEAD-------------------W------TFSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKI
        WVS++L   G+WDE ++ A F+  D                   W       FSV+  ++L   +A     S S    I+  W+ +W  NVP K +    
Subjt:  WVSELLCTSGNWDEVMIRAHFIEAD-------------------W------TFSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKI

Query:  IWAMKDN--------------LVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVW-KPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL
         W    N              +VG +   V   W   L   Y            +W +P  GW +KLN+D S  P  G  G G VLR + G V+
Subjt:  IWAMKDN--------------LVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVW-KPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL

KAF7802436.1 reverse transcriptase [Senna tora]7.3e-0554.55Show/hide
Query:  VERCVWKPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVLM
        V+R VW PP+G +LK+N DAS  PD G+ G G V+RN +GEV++
Subjt:  VERCVWKPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVLM

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]3.7e-0928.95Show/hide
Query:  SIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------W------TFSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNV
        S PSLP  + VS L+     W +  IR HF + D                   W       +SVK G++L   +     PSSS   +    WSS+W L +
Subjt:  SIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------W------TFSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNV

Query:  PSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHV-ERCVWK-PPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL
        P K++ E       D+ +       ++  + R+    L+  S  ++  +  W  PP GW  K+NVDA+V+ D+  VG G V+RN++G+++
Subjt:  PSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHV-ERCVWK-PPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL

XP_023920261.1 LOW QUALITY PROTEIN: intron-binding protein aquarius-like [Quercus suber]3.5e-0726.99Show/hide
Query:  KGRYSPSRGFFRPTWDQARLL---SGAVQS-IPSLPSSSWVSELL-CTSGNWDEVMIRAHFI-------------------------EADWTFSVKGGHR
        K R+    G     +    LL   SG V S I  +P+ + V++L    SG W+ V+I  +F+                           D  +SVK G++
Subjt:  KGRYSPSRGFFRPTWDQARLL---SGAVQS-IPSLPSSSWVSELL-CTSGNWDEVMIRAHFI-------------------------EADWTFSVKGGHR

Query:  LTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELV--VIFWWCR-LSGDYLRTQSTDHV----ERCVWKPPLGWELKLN
        L   L      S SD    + +W+ LWK+ VP+K   +   W    N +     LV    F W R +    L++++   +    ++ +WKPP    LK N
Subjt:  LTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELV--VIFWWCR-LSGDYLRTQSTDHV----ERCVWKPPLGWELKLN

Query:  VDASVRPDSGIVGGGCVLRNADGEVL
         D ++  +    G G V+RN+ GEVL
Subjt:  VDASVRPDSGIVGGGCVLRNADGEVL

XP_030479476.1 uncharacterized protein LOC115696730 [Cannabis sativa]3.3e-0528.35Show/hide
Query:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVWKPPLGWELKL
        ++V  G  L   LA     S S  +    WW   W L++PSK + +KI      ++V   +   V            R  +     +  W PP G  LK+
Subjt:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVWKPPLGWELKL

Query:  NVDASVRPDSGIVGGGCVLRNADGEVL
        NVDA+V  +  I+G G ++R+ +G V+
Subjt:  NVDASVRPDSGIVGGGCVLRNADGEVL

TrEMBL top hitse value%identityAlignment
A0A2N9IYL5 RNase H domain-containing protein1.4e-0626.62Show/hide
Query:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFEL---------------------VVIFWWCRLSGDYLRT
        +SV+ G++     + +  P SSDP R+   W S+W LNVP K R    +W    N +     L                     +   W C++     ++
Subjt:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFEL---------------------VVIFWWCRLSGDYLRT

Query:  QS------TDHVERCVWKPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL
         S         VE   W PP     K+N D +V  D    G G ++RN  GEV+
Subjt:  QS------TDHVERCVWKPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVL

A0A803NGM9 Uncharacterized protein7.6e-0823.95Show/hide
Query:  RLLSGAVQSIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------WTFS------VKGGHRLTHTLAVQGHPSSSDPDRIRVWW
        R +S  +   P LP + +V++L    G+WDE  +R+ F   D                   W +S      VK G+++  +LA + +   SD      WW
Subjt:  RLLSGAVQSIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------WTFS------VKGGHRLTHTLAVQGHPSSSDPDRIRVWW

Query:  SSLWKLNVPSKHRFEKIIWAMKDNLV---------GPDFELVVI-------------FWWCRLSGD------------YLRTQSTDHVER------CV-W
         +LW+L +P K   +  +W +  N +         G D + + +              W C+ S +             +R +    V+R      CV W
Subjt:  SSLWKLNVPSKHRFEKIIWAMKDNLV---------GPDFELVVI-------------FWWCRLSGD------------YLRTQSTDHVER------CV-W

Query:  KPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVLM
          P    +K+NVDA V+   G+ G  CV+R+  G  +M
Subjt:  KPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVLM

A0A803PU27 Uncharacterized protein5.4e-0622.6Show/hide
Query:  PSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------WTFSVKGGH----RLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKH
        P L  +  V +L    G+WD   I+  F E D                   W F+  G +    R    +A++     SD  RI  WW S+W+  +P K 
Subjt:  PSLPSSSWVSELLCTSGNWDEVMIRAHFIEAD-------------------WTFSVKGGH----RLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKH

Query:  RFEKIIWAMKDNLVGPDFEL---------------------VVIFWWCR----LSGDYLRTQSTDHVERCVWKPPLGWELKLNVDASVRPDSGIVGGGCV
          +  +W +  + +  +++L                     ++   W R    +  +    Q     E+  W  P    +K+NVDA +R   G V   CV
Subjt:  RFEKIIWAMKDNLVGPDFEL---------------------VVIFWWCR----LSGDYLRTQSTDHVERCVWKPPLGWELKLNVDASVRPDSGIVGGGCV

Query:  LRNADGEV
        +R  +G+V
Subjt:  LRNADGEV

A0A803QED6 Uncharacterized protein1.6e-0528.35Show/hide
Query:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVWKPPLGWELKL
        ++V  G  L   LA     S S  +    WW   W L++PSK + +KI      ++V   +   V            R  +     +  W PP G  LK+
Subjt:  FSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFEKIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVWKPPLGWELKL

Query:  NVDASVRPDSGIVGGGCVLRNADGEVL
        NVDA+V  +  I+G G ++R+ +G V+
Subjt:  NVDASVRPDSGIVGGGCVLRNADGEVL

A0A803QHJ7 Uncharacterized protein6.4e-0725.11Show/hide
Query:  QSIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEADWTFSVKGGHRLTHTLAVQGHPSSSDPDRIRV-WWSSLWKLNVPSK--------------------
        + I SLP+S W  +        D+++   H+   +  +SVK G+R+   L  +   S    D + V WW  LW+L +P K                    
Subjt:  QSIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEADWTFSVKGGHRLTHTLAVQGHPSSSDPDRIRV-WWSSLWKLNVPSK--------------------

Query:  ----------------------HRF-----EKIIWAMKDNLVGPDF---ELVVIFWWCRLSGDY----LRTQSTDHVERCVWKPPLGWELKLNVDASVRP
                              H F      K +W  ++  +   F      ++ W  +L GD+     R Q     E  VWK P   E+K+NVD  V+ 
Subjt:  ----------------------HRF-----EKIIWAMKDNLVGPDF---ELVVIFWWCRLSGDY----LRTQSTDHVERCVWKPPLGWELKLNVDASVRP

Query:  DSGIVGGGCVLRNADGEVL
         +G  G GCV+R   G+VL
Subjt:  DSGIVGGGCVLRNADGEVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGGGTCGATATTCCCCCAGTCGGGGTTTTTTTAGGCCAACTTGGGATCAGGCCCGTCTTTTGTCTGGAGCAGTGCAGTCGATCCCATCGCTACCTTCCTCTAG
TTGGGTAAGTGAGTTGTTGTGTACTTCTGGTAATTGGGATGAGGTTATGATTAGAGCCCATTTCATCGAGGCTGATTGGACCTTTTCTGTTAAGGGTGGACATCGACTTA
CTCATACCTTGGCTGTTCAAGGCCACCCTTCTTCATCGGACCCTGATAGAATACGTGTGTGGTGGTCTTCCTTGTGGAAGTTGAATGTACCTAGTAAACACAGGTTTGAG
AAGATCATTTGGGCGATGAAGGATAATCTTGTTGGGCCAGATTTTGAACTTGTGGTCATTTTTTGGTGGTGTCGTCTGTCAGGAGACTATTTACGAACTCAATCGACTGA
CCACGTGGAGCGTTGTGTGTGGAAGCCACCTCTTGGTTGGGAGCTAAAACTCAATGTTGATGCTTCTGTCCGACCTGATTCAGGCATAGTTGGAGGAGGTTGTGTGTTGC
GTAATGCTGACGGCGAGGTCCTTATGGTGCATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGGGTCGATATTCCCCCAGTCGGGGTTTTTTTAGGCCAACTTGGGATCAGGCCCGTCTTTTGTCTGGAGCAGTGCAGTCGATCCCATCGCTACCTTCCTCTAG
TTGGGTAAGTGAGTTGTTGTGTACTTCTGGTAATTGGGATGAGGTTATGATTAGAGCCCATTTCATCGAGGCTGATTGGACCTTTTCTGTTAAGGGTGGACATCGACTTA
CTCATACCTTGGCTGTTCAAGGCCACCCTTCTTCATCGGACCCTGATAGAATACGTGTGTGGTGGTCTTCCTTGTGGAAGTTGAATGTACCTAGTAAACACAGGTTTGAG
AAGATCATTTGGGCGATGAAGGATAATCTTGTTGGGCCAGATTTTGAACTTGTGGTCATTTTTTGGTGGTGTCGTCTGTCAGGAGACTATTTACGAACTCAATCGACTGA
CCACGTGGAGCGTTGTGTGTGGAAGCCACCTCTTGGTTGGGAGCTAAAACTCAATGTTGATGCTTCTGTCCGACCTGATTCAGGCATAGTTGGAGGAGGTTGTGTGTTGC
GTAATGCTGACGGCGAGGTCCTTATGGTGCATGTTTGA
Protein sequenceShow/hide protein sequence
MLKGRYSPSRGFFRPTWDQARLLSGAVQSIPSLPSSSWVSELLCTSGNWDEVMIRAHFIEADWTFSVKGGHRLTHTLAVQGHPSSSDPDRIRVWWSSLWKLNVPSKHRFE
KIIWAMKDNLVGPDFELVVIFWWCRLSGDYLRTQSTDHVERCVWKPPLGWELKLNVDASVRPDSGIVGGGCVLRNADGEVLMVHV