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Lag0021395 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021395
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S21
Genome locationchr7:7214623..7218940
RNA-Seq ExpressionLag0021395
SyntenyLag0021395
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]1.3e-3698.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]4.6e-37100Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]3.0e-3697.5Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]1.0e-3698.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]3.9e-3696.25Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S212.2e-37100Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A0A0L7W3 40S ribosomal protein S216.5e-3798.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S216.5e-3798.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S216.5e-3798.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S215.0e-3798.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.4e-3381.25Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        NEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-23.4e-3584.81Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        NEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q41852 40S ribosomal protein S211.2e-3279.75Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        NEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-12.2e-3481.25Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S211.4e-2367.12Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        N+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e1.6e-3581.25Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e1.6e-3581.25Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e2.4e-3684.81Show/hide
Query:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        NEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  NEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTTTTCTTCACCTTTTTCACATGGCCAACGGCCGACGCCCGGCAACCACCGCTCGCCGGTGGCCGCCCGCCGCCGCTCACAAGGCGTTCTCGTGGATATGAT
TCTCGACGGCCCAGCAGGTCACGACCTCGCAGGAAGATGGCAGCAGCGGATCTTAAGCTTCTTCTCGTGCGAAGAAGACGAATCTGAAGCTCCTTCTCATGCGAAGAAGA
CAGATCTGAAGCTCGATGACCCAGAGCTCACGAACTCTCTCTTATCCACGTCTGAAAGTGTTCGAAGACGTTGGAAAACTGACGGAGGGACCAGCGAGGGTGCAGCGACG
AAGAAGTACAACAAGGACGCGAGTGGGTTTCGTGGGTTTCGCGGCGAAGAAATACATAGCTTTCGTGGGTTTCGAAGAAAAGCAGACCGAACGGATGTGGGTTTTGTGGG
TTTCGATTTCGTGGGTTTCGTGGTTCCTCGAGAGTTTGCTGCCGACGGGAGGGGATGGTGGCACGAGGTCGGCGACGACGAAAGGAACGGAGCAAGGCGAGGGCTTCTTC
TGCACGCCTCTTCTTCTCGGATAGCTCGTCTCCTCTGCTGCGCCGCGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTG
ATTACTTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGC
TCAGGGAGATGCTGACAGTGCACTGGATCGGCTGTGGCAGAAGAAGAAAGCCGAAGTGCGTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTTTTTCTTCACCTTTTTCACATGGCCAACGGCCGACGCCCGGCAACCACCGCTCGCCGGTGGCCGCCCGCCGCCGCTCACAAGGCGTTCTCGTGGATATGAT
TCTCGACGGCCCAGCAGGTCACGACCTCGCAGGAAGATGGCAGCAGCGGATCTTAAGCTTCTTCTCGTGCGAAGAAGACGAATCTGAAGCTCCTTCTCATGCGAAGAAGA
CAGATCTGAAGCTCGATGACCCAGAGCTCACGAACTCTCTCTTATCCACGTCTGAAAGTGTTCGAAGACGTTGGAAAACTGACGGAGGGACCAGCGAGGGTGCAGCGACG
AAGAAGTACAACAAGGACGCGAGTGGGTTTCGTGGGTTTCGCGGCGAAGAAATACATAGCTTTCGTGGGTTTCGAAGAAAAGCAGACCGAACGGATGTGGGTTTTGTGGG
TTTCGATTTCGTGGGTTTCGTGGTTCCTCGAGAGTTTGCTGCCGACGGGAGGGGATGGTGGCACGAGGTCGGCGACGACGAAAGGAACGGAGCAAGGCGAGGGCTTCTTC
TGCACGCCTCTTCTTCTCGGATAGCTCGTCTCCTCTGCTGCGCCGCGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTG
ATTACTTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGC
TCAGGGAGATGCTGACAGTGCACTGGATCGGCTGTGGCAGAAGAAGAAAGCCGAAGTGCGTCAACAATAG
Protein sequenceShow/hide protein sequence
MGSFSSPFSHGQRPTPGNHRSPVAARRRSQGVLVDMILDGPAGHDLAGRWQQRILSFFSCEEDESEAPSHAKKTDLKLDDPELTNSLLSTSESVRRRWKTDGGTSEGAAT
KKYNKDASGFRGFRGEEIHSFRGFRRKADRTDVGFVGFDFVGFVVPREFAADGRGWWHEVGDDERNGARRGLLLHASSSRIARLLCCAANEEGKITELYIPRKCSATNRL
ITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ