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Lag0021479 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021479
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:8170421..8170756
RNA-Seq ExpressionLag0021479
SyntenyLag0021479
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381032.1 uncharacterized protein LOC107174551 [Citrus sinensis]7.0e-0534.65Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ
        +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  I      SDSL ++ ++N++   + EI  L+ DIQ+    
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ

Query:  F
        F
Subjt:  F

XP_015386106.1 uncharacterized protein LOC107177190 [Citrus sinensis]9.2e-0534.65Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ
        +NVDAA DV+ +  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  I      SDSL ++ ++N++   + EI  L+ DIQ+    
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ

Query:  F
        F
Subjt:  F

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.2e-0434.86Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVW--DIQKLQ
        INVD AC        IG+V R+  G +          +  PL AE+  ++EG  L + L I+QV   SDSL L+ +L   E+ ++   S VW  DI+ L 
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVW--DIQKLQ

Query:  DQFVSADFL
          F+  +FL
Subjt:  DQFVSADFL

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]9.2e-0534.65Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ
        +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  I      SDSL ++ ++N++   + EI  L+ DIQ+    
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ

Query:  F
        F
Subjt:  F

XP_024041966.1 uncharacterized protein LOC112099096 [Citrus clementina]7.0e-0534.65Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ
        +NVDAA DV+++  G+GVV+RDS GN +   + S  L  S   AE   +  G  +  +  I      SDSL ++ ++N++   + EI  L+ DIQ+    
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A5C7IIT4 Uncharacterized protein7.6e-0538.3Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDI
        IN DA  D ++K  GIGVVIRD  G++  ++  SF   L P   E   V+ GF L     +   +I SDSLS++ ++N  +   AEI  ++ DI
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDI

A0A6J1CNR4 uncharacterized protein LOC1110129505.8e-0534.86Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVW--DIQKLQ
        INVD AC        IG+V R+  G +          +  PL AE+  ++EG  L + L I+QV   SDSL L+ +L   E+ ++   S VW  DI+ L 
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVW--DIQKLQ

Query:  DQFVSADFL
          F+  +FL
Subjt:  DQFVSADFL

A0A6J1DJL6 uncharacterized protein LOC1110217119.9e-0531.78Show/hide
Query:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ
        INVD AC + +   GIGVV ++  G + V M+   ++F  PL  ET  ++EG  LT  L++  V + SDS + + ++++E +   +    V DI      
Subjt:  INVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQ

Query:  FVSADFL
        F+   F+
Subjt:  FVSADFL

B8AE80 Uncharacterized protein6.4e-0433.33Show/hide
Query:  VINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQD
        +IN DAA     + +G+GVVIRD  GN  +     F     P  AE C +     L        V +  D LS++  LN      ++I  LV DI+KL  
Subjt:  VINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQD

Query:  QFVSADFL
        +F+S  F+
Subjt:  QFVSADFL

B9F4A9 RNase H domain-containing protein6.4e-0433.33Show/hide
Query:  VINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQD
        +IN DAA     + +G+GVVIRD  GN  +     F     P  AE C +     L        V +  D LS++  LN      ++I  LV DI+KL  
Subjt:  VINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQD

Query:  QFVSADFL
        +F+S  F+
Subjt:  QFVSADFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATTAATGTCGATGCTGCTTGTGATGTTCAAAGTAAAAACATTGGCATTGGAGTTGTGATTCGAGATTCTGGCGGCAATTTGAAAGTCACCATGTTAAATTCTTT
CAACTTGTTTCTCAGTCCTTTATGCGCAGAGACTTGTGAAGTTATGGAGGGGTTTCATTTGACTAATAGATTGGAGATAAAACAGGTGAATATTCTCTCTGATTCATTAT
CTCTTATGGTCATTCTTAACCGGGAGGAGGAATGTGTAGCTGAGATTCTTTCCTTGGTATGGGATATTCAGAAATTACAGGACCAGTTTGTAAGTGCGGATTTTTTATTA
TATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAATTAATGTCGATGCTGCTTGTGATGTTCAAAGTAAAAACATTGGCATTGGAGTTGTGATTCGAGATTCTGGCGGCAATTTGAAAGTCACCATGTTAAATTCTTT
CAACTTGTTTCTCAGTCCTTTATGCGCAGAGACTTGTGAAGTTATGGAGGGGTTTCATTTGACTAATAGATTGGAGATAAAACAGGTGAATATTCTCTCTGATTCATTAT
CTCTTATGGTCATTCTTAACCGGGAGGAGGAATGTGTAGCTGAGATTCTTTCCTTGGTATGGGATATTCAGAAATTACAGGACCAGTTTGTAAGTGCGGATTTTTTATTA
TATTAA
Protein sequenceShow/hide protein sequence
MVINVDAACDVQSKNIGIGVVIRDSGGNLKVTMLNSFNLFLSPLCAETCEVMEGFHLTNRLEIKQVNILSDSLSLMVILNREEECVAEILSLVWDIQKLQDQFVSADFLL
Y