; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021517 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021517
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:8635803..8636689
RNA-Seq ExpressionLag0021517
SyntenyLag0021517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]6.2e-1038.51Show/hide
Query:  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQV
        I+PSPR +V+   + V+  S+  L+LR K         P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV   P +EV  EAC+   
Subjt:  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQV

Query:  HYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS
         +I  P+L  +      LVKS+P L+LR K V            +QV Y+SN  L LR  S
Subjt:  HYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS

KAA0042506.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]6.2e-1039.86Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPG
        P  E  ++   SGP+++ P    +V IFSNLVKS+P L+LRSKPV  P S   E EAC+    +I  P+   +  +   LVKS+P L+LR KPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPG

Query:  TEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVF
         EVEAC+    +I  +  G +  +   L K +P L+LR KP +
Subjt:  TEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVF

KAA0067952.1 uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa]4.9e-0740.83Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT
        P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV  P S   E EAC+    +I  P+   +      LVKS+P L+LR KPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT

Query:  EVEACIHQVQYISNATLGLR
              +QV Y+SN  L LR
Subjt:  EVEACIHQVQYISNATLGLR

TYK03242.1 putative integrase [Cucumis melo var. makuwa]1.9e-0634.3Show/hide
Query:  MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSN
        M ++L  E+ + S  VL +    +   IR+ +I+PSPR +V+  ++ V+  S+  L+ R K         P  E  ++   SGP+++ P+  A+V++F N
Subjt:  MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSN

Query:  LVKSNPVLELRSKPV--PISP-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS
        LVKS+P L+LR K V  P S          EVEAC+    +I  P+   +      LVKS+P L+LR +PVS
Subjt:  LVKSNPVLELRSKPV--PISP-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS

TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]8.3e-0739.02Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT
        P  E  ++   SGP+++ P+   +V++FSNLVKS+P L+LR KPV  P S   E EAC+    +I  P+   +      LVK +P L+LRSKPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT

Query:  EVEACIHQVQYISNATLGLRSKS
              ++V Y+SN  L LR  S
Subjt:  EVEACIHQVQYISNATLGLRSKS

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H3.0e-1038.51Show/hide
Query:  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQV
        I+PSPR +V+   + V+  S+  L+LR K         P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV   P +EV  EAC+   
Subjt:  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQV

Query:  HYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS
         +I  P+L  +      LVKS+P L+LR K V            +QV Y+SN  L LR  S
Subjt:  HYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS

A0A5A7TKN3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H3.0e-1039.86Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPG
        P  E  ++   SGP+++ P    +V IFSNLVKS+P L+LRSKPV  P S   E EAC+    +I  P+   +  +   LVKS+P L+LR KPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPG

Query:  TEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVF
         EVEAC+    +I  +  G +  +   L K +P L+LR KP +
Subjt:  TEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVF

A0A5A7VHZ0 Uncharacterized protein2.4e-0740.83Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT
        P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV  P S   E EAC+    +I  P+   +      LVKS+P L+LR KPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT

Query:  EVEACIHQVQYISNATLGLR
              +QV Y+SN  L LR
Subjt:  EVEACIHQVQYISNATLGLR

A0A5D3BWN6 Putative integrase9.0e-0734.3Show/hide
Query:  MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSN
        M ++L  E+ + S  VL +    +   IR+ +I+PSPR +V+  ++ V+  S+  L+ R K         P  E  ++   SGP+++ P+  A+V++F N
Subjt:  MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSN

Query:  LVKSNPVLELRSKPV--PISP-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS
        LVKS+P L+LR K V  P S          EVEAC+    +I  P+   +      LVKS+P L+LR +PVS
Subjt:  LVKSNPVLELRSKPV--PISP-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H4.0e-0739.02Show/hide
Query:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT
        P  E  ++   SGP+++ P+   +V++FSNLVKS+P L+LR KPV  P S   E EAC+    +I  P+   +      LVK +P L+LRSKPV      
Subjt:  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGT

Query:  EVEACIHQVQYISNATLGLRSKS
              ++V Y+SN  L LR  S
Subjt:  EVEACIHQVQYISNATLGLRSKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACATTATGCTAAGAAAAGAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATAATTGAACCCAGTCCTAGAAC
TGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGA
GGTCGAAGCCTGTACCATCAGGTCCAATATATTTGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCG
AAGCCTGTACCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGCTGAGGTCGAAGTCTTCTCAAGTTCTGGT
TAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTTCAATATATTTCGAATGCAACCCTAG
GGCTGAGGTCGAAGTCTTCTCAAATTTTGGCTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTATTCATCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACATTATGCTAAGAAAAGAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATAATTGAACCCAGTCCTAGAAC
TGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGA
GGTCGAAGCCTGTACCATCAGGTCCAATATATTTGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCG
AAGCCTGTACCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGCTGAGGTCGAAGTCTTCTCAAGTTCTGGT
TAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTTCAATATATTTCGAATGCAACCCTAG
GGCTGAGGTCGAAGTCTTCTCAAATTTTGGCTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTATTCATCAGGTAA
Protein sequenceShow/hide protein sequence
MHIMLRKEILVKSNPVLEQRSKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRS
KPVPISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVFIR