; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021596 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021596
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr7:9641913..9644159
RNA-Seq ExpressionLag0021596
SyntenyLag0021596
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW79096.1 putative ribonuclease H protein [Vitis vinifera]8.4e-2130Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE
        ++V D  SR +    +  + +GF VG +   ++ LQ+ADDTI F     + LQN   IL +F + S L +N+ K++++G+               VE   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE

Query:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-------LGKTCRWIRGV-------------
         +LDGWK+  LS GGRITL +S L+ I  +  SL K P  +   +EKL +DF+WSG     K  + R+D       LG    ++R V             
Subjt:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-------LGKTCRWIRGV-------------

Query:  -FDHE--LASWVALVDKLSV--FYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW
         +D++   + +  L   +SV         D   W+   SG+FS +  F  L+  S  I     K +W   +  K KA  W
Subjt:  -FDHE--LASWVALVDKLSV--FYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW

RVW89856.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.2e-2027.18Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID-------------------
        ++V D  SR +    ++ +L GF+VG N   ++ LQ+ADDTI F   + + LQ    +L  F   SGL +N+ K+++  I+                   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID-------------------

Query:  -----------------------VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFK----------
                               +E    +LDGW+   LS  GRITL QS L  +  +  SL K P  V   +E+L KDF+WSG     +          
Subjt:  -----------------------VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFK----------

Query:  ----LAVARFDLGKTCRWIRGVFDHELASWVALVDKL-SVFYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLWSL
            +AV    L K+ R    + D E+     L+  L  +       D   W    SG+F  +  F  L+  S       +K +W      K K+F+W +
Subjt:  ----LAVARFDLGKTCRWIRGVFDHELASWVALVDKL-SVFYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLWSL

Query:  AFRTVNTDD
        A + VNT+D
Subjt:  AFRTVNTDD

RVX00013.1 putative ribonuclease H protein [Vitis vinifera]9.2e-2037.14Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE
        ++V D  SR +    + R++ GF VG +   ++LLQ+ADDTI F     D LQN   IL +F + SGL +N+ K+++ G+               VE   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE

Query:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTCR
         +LDGWK   LS GGRITL QS L+ +  +  SL K P  +   +EKL +DF+W G     K  + R+D+   CR
Subjt:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTCR

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]5.2e-2339.05Show/hide
Query:  ATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVED
        AT+ L     L P   +++GD+FSR V +C ++RI++GF VG     ++ L+YADDTIIFCP     L  WW ++S+F+KGSGL +N+AKTSLIGI++ +
Subjt:  ATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVED

Query:  QEA--KLD---------GWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSG
         EA  K+D          ++ + L  GG   +       I   +  + KAP  + K M K+++D  WSG
Subjt:  QEA--KLD---------GWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSG

XP_028121753.1 uncharacterized protein LOC114318966 [Camellia sinensis]9.9e-2226.73Show/hide
Query:  MATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVE
        +A++ L     L P    +V D   R +     K ++ GF VG +  E+  LQ+ADDTI F   + + +     +L IF   SGL +N++K+S++GI++ 
Subjt:  MATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVE

Query:  DQEAK------------------------------------------LDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWS
        D   +                                          L+GWK   LSKGGR  L QSVL S+ ++  S+ K P  + + +EKL++DF+W 
Subjt:  DQEAK------------------------------------------LDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWS

Query:  GDSPSFKLAVARFD--------------------LGKTCRWIRGVFDHELASWVALV-DKLSVFYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIH
        G        + R+D                    +    +W+        + W +++  K  V   GR+ + +       G+FS +  F KL + +P I 
Subjt:  GDSPSFKLAVARFD--------------------LGKTCRWIRGVFDHELASWVALV-DKLSVFYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIH

Query:  TSL-TKLIWKHNSHKKSKAFLWSLAFRTVNTDD
          L  K IWK +   K K F+WSL  + V T+D
Subjt:  TSL-TKLIWKHNSHKKSKAFLWSLAFRTVNTDD

TrEMBL top hitse value%identityAlignment
A0A2N9GBB9 Reverse transcriptase domain-containing protein9.0e-2128.94Show/hide
Query:  IVGDAFSRTVQYCLKKRILRGFQVGSNLE---EIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID-----------------
        +V +  SR ++   +   +RGFQVG  L    E++ L YADDTI+FC    + +     +L+ F   +GL +N++K+ ++ I                  
Subjt:  IVGDAFSRTVQYCLKKRILRGFQVGSNLE---EIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID-----------------

Query:  ------------------------VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLG
                                VE  E +L GWK + LSKGGR+TL +S L+S+  +  SL K P  V K +EKL ++F+W G    FKL +A   LG
Subjt:  ------------------------VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLG

Query:  KTCRWIRGVFDHELASWV--------ALVDKLSVFYE--------GREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW
        K   W  GV D +   WV          VD ++VF+             D L W+   SG F  R  +   A++  +      K IW     ++   F+W
Subjt:  KTCRWIRGVFDHELASWV--------ALVDKLSVFYE--------GREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW

Query:  SLAFRTVNTDD
        + A+  + T D
Subjt:  SLAFRTVNTDD

A0A438EGK2 Putative ribonuclease H protein4.5e-2036.16Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE
        ++V D  SR +    +  I  GF VG +   ++LLQ+ADDTI F     D+LQN   IL +F + SGL +N+ K+++ G+               VE   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE

Query:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-LGKTCRW
         +LDGWK   LS GGRITL QS L+ I  +  SL K P  +   +EK+ +DF+WSG     +  + R++ + +  RW
Subjt:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-LGKTCRW

A0A438H3D6 Putative ribonuclease H protein4.0e-2130Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE
        ++V D  SR +    +  + +GF VG +   ++ LQ+ADDTI F     + LQN   IL +F + S L +N+ K++++G+               VE   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE

Query:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-------LGKTCRWIRGV-------------
         +LDGWK+  LS GGRITL +S L+ I  +  SL K P  +   +EKL +DF+WSG     K  + R+D       LG    ++R V             
Subjt:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFD-------LGKTCRWIRGV-------------

Query:  -FDHE--LASWVALVDKLSV--FYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW
         +D++   + +  L   +SV         D   W+   SG+FS +  F  L+  S  I     K +W   +  K KA  W
Subjt:  -FDHE--LASWVALVDKLSV--FYEGREKDRLVWTADGSGMFSTRFTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLW

A0A438ITE7 Putative ribonuclease H protein4.5e-2037.14Show/hide
Query:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE
        ++V D  SR +    + R++ GF VG +   ++LLQ+ADDTI F     D LQN   IL +F + SGL +N+ K+++ G+               VE   
Subjt:  SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGID--------------VEDQE

Query:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTCR
         +LDGWK   LS GGRITL QS L+ +  +  SL K P  +   +EKL +DF+W G     K  + R+D+   CR
Subjt:  AKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTCR

A0A6J1E196 uncharacterized protein LOC1110250192.5e-2339.05Show/hide
Query:  ATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVED
        AT+ L     L P   +++GD+FSR V +C ++RI++GF VG     ++ L+YADDTIIFCP     L  WW ++S+F+KGSGL +N+AKTSLIGI++ +
Subjt:  ATKELENQQSLRP---SIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVED

Query:  QEA--KLD---------GWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSG
         EA  K+D          ++ + L  GG   +       I   +  + KAP  + K M K+++D  WSG
Subjt:  QEA--KLD---------GWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.9e-0526.58Show/hide
Query:  VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTC
        +E   +++ GW+  +LS  GR+TL ++VL+S+ +H  S +  P+ ++  +++L + F+W   +   K  + ++   K C
Subjt:  VEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTC

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-0428.97Show/hide
Query:  NKGDILQNW---WDILSIFMKGSGLSLNIAKTSLIGIDVEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGD
        +K DIL ++      L +   G  L      TS  G  VE    ++  W +  LS  GR+ L  SV++S++    S  + P   IK ++ +   F+WSG 
Subjt:  NKGDILQNW---WDILSIFMKGSGLSLNIAKTSLIGIDVEDQEAKLDGWKSISLSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGD

Query:  SPSFKLA
          + K A
Subjt:  SPSFKLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACAAAAGAACTTGAAAATCAACAATCTCTTCGACCTTCTATTGTGGGTGACGCTTTTAGTCGAACTGTTCAATATTGTCTTAAGAAAAGGATTTTAAGGGGCTT
CCAGGTGGGAAGCAACTTGGAGGAGATTGCTTTGCTTCAATATGCTGATGACACGATTATTTTCTGCCCTAATAAAGGGGACATTCTCCAGAATTGGTGGGATATTTTGA
GCATTTTTATGAAAGGCTCGGGTCTATCCTTAAATATAGCAAAAACCTCGCTGATAGGCATAGATGTGGAGGATCAGGAGGCCAAGCTTGATGGGTGGAAAAGTATTTCC
CTATCCAAAGGGGGAAGAATTACGCTAGCTCAGTCGGTTCTTAATAGCATATCCTTGCACCAATTTTCTCTTTTAAAAGCGCCTAAAGTTGTTATTAAAACCATGGAGAA
GCTGATTAAGGACTTCATATGGAGTGGGGATTCTCCAAGTTTCAAGCTGGCTGTGGCGAGATTCGATCTTGGGAAGACGTGTCGTTGGATCAGAGGTGTTTTTGACCATG
AGCTTGCCAGTTGGGTTGCCCTGGTGGATAAGTTGAGTGTTTTTTATGAGGGAAGGGAGAAAGATAGGTTGGTTTGGACAGCTGATGGGTCAGGGATGTTTTCCACCAGA
TTTACCTTCCAAAAGTTAGCTATGCAAAGTCCCAAAATTCACACCTCCTTAACCAAGTTGATTTGGAAGCACAATAGCCACAAGAAATCAAAGGCCTTCTTATGGTCTTT
GGCTTTTAGAACTGTGAATACGGATGATAAGGCGTGGAACTTCTTCGCAAAGCTGCTCGAGTTGTGTTGGTGTATGCCAAAACGTGTTGAAGATTGGATGGTGGAGACTT
GTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACAAAAGAACTTGAAAATCAACAATCTCTTCGACCTTCTATTGTGGGTGACGCTTTTAGTCGAACTGTTCAATATTGTCTTAAGAAAAGGATTTTAAGGGGCTT
CCAGGTGGGAAGCAACTTGGAGGAGATTGCTTTGCTTCAATATGCTGATGACACGATTATTTTCTGCCCTAATAAAGGGGACATTCTCCAGAATTGGTGGGATATTTTGA
GCATTTTTATGAAAGGCTCGGGTCTATCCTTAAATATAGCAAAAACCTCGCTGATAGGCATAGATGTGGAGGATCAGGAGGCCAAGCTTGATGGGTGGAAAAGTATTTCC
CTATCCAAAGGGGGAAGAATTACGCTAGCTCAGTCGGTTCTTAATAGCATATCCTTGCACCAATTTTCTCTTTTAAAAGCGCCTAAAGTTGTTATTAAAACCATGGAGAA
GCTGATTAAGGACTTCATATGGAGTGGGGATTCTCCAAGTTTCAAGCTGGCTGTGGCGAGATTCGATCTTGGGAAGACGTGTCGTTGGATCAGAGGTGTTTTTGACCATG
AGCTTGCCAGTTGGGTTGCCCTGGTGGATAAGTTGAGTGTTTTTTATGAGGGAAGGGAGAAAGATAGGTTGGTTTGGACAGCTGATGGGTCAGGGATGTTTTCCACCAGA
TTTACCTTCCAAAAGTTAGCTATGCAAAGTCCCAAAATTCACACCTCCTTAACCAAGTTGATTTGGAAGCACAATAGCCACAAGAAATCAAAGGCCTTCTTATGGTCTTT
GGCTTTTAGAACTGTGAATACGGATGATAAGGCGTGGAACTTCTTCGCAAAGCTGCTCGAGTTGTGTTGGTGTATGCCAAAACGTGTTGAAGATTGGATGGTGGAGACTT
GTGGATGA
Protein sequenceShow/hide protein sequence
MATKELENQQSLRPSIVGDAFSRTVQYCLKKRILRGFQVGSNLEEIALLQYADDTIIFCPNKGDILQNWWDILSIFMKGSGLSLNIAKTSLIGIDVEDQEAKLDGWKSIS
LSKGGRITLAQSVLNSISLHQFSLLKAPKVVIKTMEKLIKDFIWSGDSPSFKLAVARFDLGKTCRWIRGVFDHELASWVALVDKLSVFYEGREKDRLVWTADGSGMFSTR
FTFQKLAMQSPKIHTSLTKLIWKHNSHKKSKAFLWSLAFRTVNTDDKAWNFFAKLLELCWCMPKRVEDWMVETCG