; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021601 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021601
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:9665165..9672374
RNA-Seq ExpressionLag0021601
SyntenyLag0021601
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018821989.1 uncharacterized protein LOC108992010 [Juglans regia]2.3e-1428Show/hide
Query:  LVTPANLRTKKKDFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKN-KCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRN
        L T  NLR K  D   SF+D  +K+   T  E L    + CW++W+ +N K   G+ +         ++D L   L + +    G    RN+  S + ++
Subjt:  LVTPANLRTKKKDFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKN-KCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRN

Query:  RRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSE
         RW  P  G +KLN D A S++ S+  +G + R+ +G+V++AA+      L  +  E  AIL G++L + LG   L +ESD  L +N  ++     +   
Subjt:  RRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSE

Query:  AIVMSIWSLLPFFKGYILQFCSYNC
         ++  +  L+  F+   L   + +C
Subjt:  AIVMSIWSLLPFFKGYILQFCSYNC

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.5e-1733.72Show/hide
Query:  SFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADA
        SF+D W+ +      +   L   + WAIW D+N   HG  + +   R  WI  Y +++ +  E           + SS    + RW PP D   K+N+DA
Subjt:  SFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADA

Query:  ACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFI
        AC    +   LG+I R+  G ++VA S  L + L    AE+  ILE ++L+ S   T L+VESDCQ AI  +
Subjt:  ACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFI

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]4.4e-1332.82Show/hide
Query:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKL
        DF  S  D  + +    +  +  L+ V  WAIW+D+N       IP ++ RS WI  Y+  F   +  SL    +  +  S+       WSPP  G+ K+
Subjt:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKL

Query:  NADAACSREVSMISLGIICRNFEGKVMVAAS
        N DAAC +      +GI+CRN +G+++ AAS
Subjt:  NADAACSREVSMISLGIICRNFEGKVMVAAS

XP_022848821.1 AP-4 complex subunit mu-like [Olea europaea var. sylvestris]8.0e-1529.05Show/hide
Query:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGE-GIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWK
        D+ G F+   + I +  + + L   ++  W  W  +NK VH +  +P  Q  +  +   L + + L+    PG+          L  N RWS P     K
Subjt:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGE-GIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWK

Query:  LNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMSIWSLLPF
        LN D A   + +   +GII R+ EG+ ++ AS   +  LE    E  A+++G++L ++LG + L+VESDC   +N +NK +   S   + V  I  L+  
Subjt:  LNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMSIWSLLPF

Query:  FKGYILQFCS
        F    LQ+C+
Subjt:  FKGYILQFCS

XP_030936557.1 uncharacterized protein LOC115961775 [Quercus lobata]2.0e-1331.07Show/hide
Query:  FRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLN-RNRRWSPPNDGFWKL
        F+ SF+D  + I S +T+++L L   + WAIWS++N  VH EG  S        ++ +E F             S + D   +   + RWSPP  G +K+
Subjt:  FRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLN-RNRRWSPPNDGFWKL

Query:  NADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFIN
        N D A S +    S+G++ R+F G+V+ A    L     A ++E++A+ +G+  +  L    ++VESD  + I  IN
Subjt:  NADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFIN

TrEMBL top hitse value%identityAlignment
A0A0D2MPE5 RNase H domain-containing protein1.4e-1231.91Show/hide
Query:  GLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNR---RWSPPNDGFWKLNADAACSREVSMISLGIIC
        GLIVVS WAIW  +NK VH   + S +     I  ++ SF         G+    + +S    + R   +WSPP  G++K+N DA  S   +   LG I 
Subjt:  GLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNR---RWSPPNDGFWKLNADAACSREVSMISLGIIC

Query:  RNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMSIWSLLPFFKGYILQF
        RN EG +M       ++     IAE  A+L+G++ ++ +G + +++ESD +L +N I K S  +S+S      + +L   F     QF
Subjt:  RNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMSIWSLLPFFKGYILQF

A0A2I4ERH4 uncharacterized protein LOC1089920101.1e-1428Show/hide
Query:  LVTPANLRTKKKDFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKN-KCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRN
        L T  NLR K  D   SF+D  +K+   T  E L    + CW++W+ +N K   G+ +         ++D L   L + +    G    RN+  S + ++
Subjt:  LVTPANLRTKKKDFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKN-KCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRN

Query:  RRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSE
         RW  P  G +KLN D A S++ S+  +G + R+ +G+V++AA+      L  +  E  AIL G++L + LG   L +ESD  L +N  ++     +   
Subjt:  RRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSE

Query:  AIVMSIWSLLPFFKGYILQFCSYNC
         ++  +  L+  F+   L   + +C
Subjt:  AIVMSIWSLLPFFKGYILQFCSYNC

A0A6J1BQ49 uncharacterized protein LOC1110047864.1e-1733.72Show/hide
Query:  SFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADA
        SF+D W+ +      +   L   + WAIW D+N   HG  + +   R  WI  Y +++ +  E           + SS    + RW PP D   K+N+DA
Subjt:  SFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADA

Query:  ACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFI
        AC    +   LG+I R+  G ++VA S  L + L    AE+  ILE ++L+ S   T L+VESDCQ AI  +
Subjt:  ACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFI

A0A6J1CTE3 uncharacterized protein LOC1110145782.1e-1332.82Show/hide
Query:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKL
        DF  S  D  + +    +  +  L+ V  WAIW+D+N       IP ++ RS WI  Y+  F   +  SL    +  +  S+       WSPP  G+ K+
Subjt:  DFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKL

Query:  NADAACSREVSMISLGIICRNFEGKVMVAAS
        N DAAC +      +GI+CRN +G+++ AAS
Subjt:  NADAACSREVSMISLGIICRNFEGKVMVAAS

A0A803Q8E0 Uncharacterized protein2.8e-1326.94Show/hide
Query:  DKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLP-----GMHLSRNEDSS----------SLNRNRRWSP
        D  I ++S  + ++L LI+ + WAIW ++NK +HG    SSQ  + +   YL  + R   K+        +H S N  ++            N +  WSP
Subjt:  DKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLP-----GMHLSRNEDSS----------SLNRNRRWSP

Query:  PNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMS
        P+    K+N DAA ++E  ++ +G I R   G V+ A S  +     +   E  A+   +  ++ L   +  VE+D     + +N  SP  S    ++M 
Subjt:  PNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFINKISPVWSDSEAIVMS

Query:  IWSLLPFFKGYILQFCSYN
        +  LL FF G  +     N
Subjt:  IWSLLPFFKGYILQFCSYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.5e-0627.7Show/hide
Query:  WAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVA
        W IW   N  V        QT  +   +  + +L  N  +    + +RN D S   RN +WSPP     K N DA+     ++  LG I RN +G V+  
Subjt:  WAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLNEKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVA

Query:  ASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFIN
               R+    AE   ++  I+ S   G   ++ E D Q     IN
Subjt:  ASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAGCTTATATCGAAATTACCTATTAGTGGTGGGGCACCAGATTGTTGTGTTTGACATTTTGAGCGTCATGGTCGATATACGGTCTGAGACGACTGACCATGCCTT
GTTTCGATGTTCGCGGGCAAAACGGTTATGGAGGATGGTTCATAGTAAGGCCGACATTGAAGAAGTTGATCATTCGTGTGTTCAGGACCGACTCCTATCTGTCATGGATG
CTAATCCCGGTACGTGTTTGGATTGGGTCTGTGTGGGCGCGTGGTCAATTTGGAATGATCGCAATAATGTGGTACATGGTAAGACTATCCCTGATTTAGTAGATATATGC
GAGTGGATTGGCCAATATATGGATTTCCAACTTGCAAATGTGGGTTTTACCATGCCTACTGTTAGAATAGAGCATAATATTTGGCGTTCGAATACAAATGCGATAATCGT
TCATGTGGATGTTTCGTGTGATGAGAGCCTTCAGATGGGGGGTTTTGGTGCGATTATTCGGTGTAGGCAGGGAGATTTGGTGGCGGCTATGCATAGCCATTATCCATTTT
TTTTATCCCTTGTGATTTTGGACCACCCCGATGCACAAGTAACTGGCGAGGACAACCGGGCAGAAATCGGACTGGGAGATGGACCCAATAGGCGAAACCGACAGGTGGGA
CGGGCCAAGACCGAAGGGGTCGGGCGTTTGTCCAGACCCCCTACTCGGCCGAGCCCATCTGGCTCCGTTTGGTCCCCACCGCCTCTGGTTGCCCCGATTCGGTCTGCCCT
CCTACTTCCGTCTTCTGACTTAAGCATCGGAGTCGGTGTGGCTAGCACCATACCGGTGTGCAGTTCCAATGTTGTCACCGCCACCATCGATCCGCTCGTGCCACCGTCAT
TCCCTGCAGCTGTCGCTGTCTTTTGTCTGCCGTCTTTCACCAAAGTTTACATTGGGGTGAGCAGCGGTCGGTCGGGGTCGGTTTTTGGCCAAAACCGACGCCGAAAACCG
ACCATTCGGTTTTGTTCGGTCGGTGGTCTTCTGTTTTTGATGGGTTCGAGGCGTCGACCGATCGACTACACCAACGGTCGGTCGGATTTAGTCGGTTTGGTGACTCCGGC
GAACTTGAGAACAAAAAAAAAGGATTTTCGGGGAAGCTTCGTGGACAAATGGATAAAGATAAACTCCTGCACAACAGTGGAAAATCTAGGTTTAATTGTTGTCTCTTGTT
GGGCTATTTGGAGTGACAAAAACAAGTGCGTTCATGGTGAAGGGATTCCATCTTCTCAAACTCGAAGCAAATGGATTAAGGATTACCTTGAATCCTTCCTGCGATTGAAT
GAAAAGTCCTTGCCAGGCATGCATCTTAGTCGTAACGAGGATTCTTCTTCTTTGAACAGAAATCGACGGTGGTCTCCTCCGAATGATGGATTTTGGAAACTTAATGCTGA
TGCGGCATGTTCGAGAGAGGTTTCGATGATAAGTCTTGGGATAATTTGCAGAAATTTCGAGGGCAAGGTCATGGTGGCTGCGTCTACGGCGTTGGACGTGAGGCTGGAAG
CCCATATAGCTGAATTATGGGCCATCTTGGAAGGAATAAGGCTTTCTATTTCGTTGGGCTGCACTATGTTGATGGTTGAGTCTGATTGTCAACTTGCTATCAATTTCATC
AACAAGATTTCTCCAGTTTGGTCAGATTCTGAGGCCATAGTTATGTCTATTTGGAGTCTTTTGCCTTTTTTTAAGGGATATATCCTTCAATTTTGCTCCTATAACTGCCC
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAGCTTATATCGAAATTACCTATTAGTGGTGGGGCACCAGATTGTTGTGTTTGACATTTTGAGCGTCATGGTCGATATACGGTCTGAGACGACTGACCATGCCTT
GTTTCGATGTTCGCGGGCAAAACGGTTATGGAGGATGGTTCATAGTAAGGCCGACATTGAAGAAGTTGATCATTCGTGTGTTCAGGACCGACTCCTATCTGTCATGGATG
CTAATCCCGGTACGTGTTTGGATTGGGTCTGTGTGGGCGCGTGGTCAATTTGGAATGATCGCAATAATGTGGTACATGGTAAGACTATCCCTGATTTAGTAGATATATGC
GAGTGGATTGGCCAATATATGGATTTCCAACTTGCAAATGTGGGTTTTACCATGCCTACTGTTAGAATAGAGCATAATATTTGGCGTTCGAATACAAATGCGATAATCGT
TCATGTGGATGTTTCGTGTGATGAGAGCCTTCAGATGGGGGGTTTTGGTGCGATTATTCGGTGTAGGCAGGGAGATTTGGTGGCGGCTATGCATAGCCATTATCCATTTT
TTTTATCCCTTGTGATTTTGGACCACCCCGATGCACAAGTAACTGGCGAGGACAACCGGGCAGAAATCGGACTGGGAGATGGACCCAATAGGCGAAACCGACAGGTGGGA
CGGGCCAAGACCGAAGGGGTCGGGCGTTTGTCCAGACCCCCTACTCGGCCGAGCCCATCTGGCTCCGTTTGGTCCCCACCGCCTCTGGTTGCCCCGATTCGGTCTGCCCT
CCTACTTCCGTCTTCTGACTTAAGCATCGGAGTCGGTGTGGCTAGCACCATACCGGTGTGCAGTTCCAATGTTGTCACCGCCACCATCGATCCGCTCGTGCCACCGTCAT
TCCCTGCAGCTGTCGCTGTCTTTTGTCTGCCGTCTTTCACCAAAGTTTACATTGGGGTGAGCAGCGGTCGGTCGGGGTCGGTTTTTGGCCAAAACCGACGCCGAAAACCG
ACCATTCGGTTTTGTTCGGTCGGTGGTCTTCTGTTTTTGATGGGTTCGAGGCGTCGACCGATCGACTACACCAACGGTCGGTCGGATTTAGTCGGTTTGGTGACTCCGGC
GAACTTGAGAACAAAAAAAAAGGATTTTCGGGGAAGCTTCGTGGACAAATGGATAAAGATAAACTCCTGCACAACAGTGGAAAATCTAGGTTTAATTGTTGTCTCTTGTT
GGGCTATTTGGAGTGACAAAAACAAGTGCGTTCATGGTGAAGGGATTCCATCTTCTCAAACTCGAAGCAAATGGATTAAGGATTACCTTGAATCCTTCCTGCGATTGAAT
GAAAAGTCCTTGCCAGGCATGCATCTTAGTCGTAACGAGGATTCTTCTTCTTTGAACAGAAATCGACGGTGGTCTCCTCCGAATGATGGATTTTGGAAACTTAATGCTGA
TGCGGCATGTTCGAGAGAGGTTTCGATGATAAGTCTTGGGATAATTTGCAGAAATTTCGAGGGCAAGGTCATGGTGGCTGCGTCTACGGCGTTGGACGTGAGGCTGGAAG
CCCATATAGCTGAATTATGGGCCATCTTGGAAGGAATAAGGCTTTCTATTTCGTTGGGCTGCACTATGTTGATGGTTGAGTCTGATTGTCAACTTGCTATCAATTTCATC
AACAAGATTTCTCCAGTTTGGTCAGATTCTGAGGCCATAGTTATGTCTATTTGGAGTCTTTTGCCTTTTTTTAAGGGATATATCCTTCAATTTTGCTCCTATAACTGCCC
ATGA
Protein sequenceShow/hide protein sequence
MSSLYRNYLLVVGHQIVVFDILSVMVDIRSETTDHALFRCSRAKRLWRMVHSKADIEEVDHSCVQDRLLSVMDANPGTCLDWVCVGAWSIWNDRNNVVHGKTIPDLVDIC
EWIGQYMDFQLANVGFTMPTVRIEHNIWRSNTNAIIVHVDVSCDESLQMGGFGAIIRCRQGDLVAAMHSHYPFFLSLVILDHPDAQVTGEDNRAEIGLGDGPNRRNRQVG
RAKTEGVGRLSRPPTRPSPSGSVWSPPPLVAPIRSALLLPSSDLSIGVGVASTIPVCSSNVVTATIDPLVPPSFPAAVAVFCLPSFTKVYIGVSSGRSGSVFGQNRRRKP
TIRFCSVGGLLFLMGSRRRPIDYTNGRSDLVGLVTPANLRTKKKDFRGSFVDKWIKINSCTTVENLGLIVVSCWAIWSDKNKCVHGEGIPSSQTRSKWIKDYLESFLRLN
EKSLPGMHLSRNEDSSSLNRNRRWSPPNDGFWKLNADAACSREVSMISLGIICRNFEGKVMVAASTALDVRLEAHIAELWAILEGIRLSISLGCTMLMVESDCQLAINFI
NKISPVWSDSEAIVMSIWSLLPFFKGYILQFCSYNCP