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Lag0021626 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021626
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr7:10182997..10183577
RNA-Seq ExpressionLag0021626
SyntenyLag0021626
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG+DRATG+ +E   ++GSN P    D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

KAA0035078.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2843.48Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP+AKG+ NKPF ++++L YVFG+DRATG+ +E   +MGSN P    D     +     PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKKSGSDTHIAE----IGTSFTEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+        E    +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKKSGSDTHIAE----IGTSFTEQLKSIAEWPEKNMS

KAA0067158.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG++RATG+ +E   ++GSN PD   D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D  R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG+DRATG+ +E   ++GSN P    D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

TYK26007.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG++RATG+ +E   ++GSN PD   D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D  R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

TrEMBL top hitse value%identityAlignment
A0A5A7SWU2 Retrotransposon protein5.2e-2943.48Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP+AKG+ NKPF ++++L YVFG+DRATG+ +E   +MGSN P    D     +     PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKKSGSDTHIAE----IGTSFTEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+        E    +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKKSGSDTHIAE----IGTSFTEQLKSIAEWPEKNMS

A0A5A7TRV1 Retrotransposon protein2.0e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG+DRATG+ +E   ++GSN P    D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

A0A5A7VHE7 Retrotransposon protein8.8e-2944.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG++RATG+ +E   ++GSN PD   D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D  R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

A0A5D3DCZ1 Retrotransposon protein2.0e-2844.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG+DRATG+ +E   ++GSN P    D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D+ R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

A0A5D3DQQ3 Retrotransposon protein8.8e-2944.1Show/hide
Query:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM
        M GP CS FGWNDE KCI AEKE FD WV+ HP AKG+ NKPF ++++L YVFG++RATG+ +E   ++GSN PD   D     + +   PP      ++
Subjt:  MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANM

Query:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS
        S+D  R +  S++      S GSKRK+ S  D  +  I  +     EQL+ IAEWP +N++
Subjt:  SEDEPRGTPGSQSCPTGRSSRGSKRKK-SGSDTHIAEIGTSF---TEQLKSIAEWPEKNMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein6.1e-0638.71Show/hide
Query:  SDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGE
        S FGW+ E K   A  E +  ++K HP  K M+ +   HFEDL  +FG   ATG  +  M +
Subjt:  SDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGE

AT2G24960.1 unknown protein1.9e-0430.91Show/hide
Query:  FGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVS
        F W+   + +  +   + L++K HP A+  + KP L+F DL  ++G   A G+ S
Subjt:  FGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVS

AT2G24960.2 unknown protein1.9e-0430.91Show/hide
Query:  FGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVS
        F W+   + +  +   + L++K HP A+  + KP L+F DL  ++G   A G+ S
Subjt:  FGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVS

AT5G27260.1 unknown protein6.7e-0538.18Show/hide
Query:  SDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGK
        S FGW+   K   A  E +  ++K HP  K +R   F  F++L  +FG+  ATGK
Subjt:  SDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGCCCTGGATGTAGCGACTTTGGCTGGAATGATGAATTTAAATGCATCGAGGCAGAGAAGGAAACATTTGACTTGTGGGTGAAGGGGCATCCTATCGCAAAAGG
CATGCGTAACAAGCCTTTCCTGCATTTTGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACGGGGAAGGTGTCAGAGGTGATGGGCGAGATGGGATCGAACATGC
CAGATGATGAGGTAGACCTCAGTGCATCCCTAGAGAACGACACCCACATCCCGCCGTTCACCATGCCCACTGCGAACATGTCAGAGGATGAACCTCGGGGTACGCCAGGC
AGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAAGTCTGGGTCTGACACGCACATAGCAGAAATTGGCACCTCGTTTACAGAGCAACTGAAGTC
AATTGCAGAGTGGCCTGAAAAAAACATGTCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGCCCTGGATGTAGCGACTTTGGCTGGAATGATGAATTTAAATGCATCGAGGCAGAGAAGGAAACATTTGACTTGTGGGTGAAGGGGCATCCTATCGCAAAAGG
CATGCGTAACAAGCCTTTCCTGCATTTTGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACGGGGAAGGTGTCAGAGGTGATGGGCGAGATGGGATCGAACATGC
CAGATGATGAGGTAGACCTCAGTGCATCCCTAGAGAACGACACCCACATCCCGCCGTTCACCATGCCCACTGCGAACATGTCAGAGGATGAACCTCGGGGTACGCCAGGC
AGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAAGTCTGGGTCTGACACGCACATAGCAGAAATTGGCACCTCGTTTACAGAGCAACTGAAGTC
AATTGCAGAGTGGCCTGAAAAAAACATGTCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGA
Protein sequenceShow/hide protein sequence
MLGPGCSDFGWNDEFKCIEAEKETFDLWVKGHPIAKGMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASLENDTHIPPFTMPTANMSEDEPRGTPG
SQSCPTGRSSRGSKRKKSGSDTHIAEIGTSFTEQLKSIAEWPEKNMSQRLTSEIKLSPT