; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021629 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021629
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr7:10208901..10213194
RNA-Seq ExpressionLag0021629
SyntenyLag0021629
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035938.1 pol protein [Cucumis melo var. makuwa]2.4e-10674.12Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVV DALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

KAA0043669.1 pol protein [Cucumis melo var. makuwa]2.4e-10674.12Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  D+ERAEI+++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

KAA0051357.1 pol protein [Cucumis melo var. makuwa]8.3e-10774.51Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++GRLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVK PRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

KAA0058399.1 pol protein [Cucumis melo var. makuwa]3.2e-10673.73Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K +LL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TV+
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

TYK01613.1 pol protein [Cucumis melo var. makuwa]3.2e-10674.51Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

TrEMBL top hitse value%identityAlignment
A0A5A7SZD6 Pol protein1.2e-10674.12Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVV DALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

A0A5A7T8B6 Reverse transcriptase1.5e-10673.73Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QAH+  DLERAEI ++VG VT +LAQLT++ +LRQR ID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVS+CLVCQQVKAPRQKPAGLLQPLS+P+WKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIVKLHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

A0A5A7TR61 Pol protein1.2e-10674.12Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  D+ERAEI+++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

A0A5A7UAA8 Reverse transcriptase4.0e-10774.51Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++GRLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVK PRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

A0A5D3BPI1 Reverse transcriptase1.5e-10674.51Show/hide
Query:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV
        KANVVADALSRK +H+  LIT QA +  DLERAEI ++VG VT +LAQLTV+ +LRQRIID Q NDP LV KR   EAGQ  EFSLSSD GL ++ RLCV
Subjt:  KANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCV

Query:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI
        P ++ +K ELL EAH+SPFS+HPGSTKMY DLK+ YWW++MKRE+A+FVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWE++SMDFITGLPRT +G+TVI
Subjt:  PGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVI

Query:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF
        WV++DRLTKSAHF+PGK TYT  KWAQLYM+EIV+LHGVPVSIVSDRD RFTS F
Subjt:  WVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.5e-2627.38Show/hide
Query:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP
        AN +ADALSR       ++     I  D E   I          + Q+++    + +++ E  ND  L+   +  +        L   L +  + ++ +P
Subjt:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP

Query:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW
         +  L + ++ + H     IHPG   + + + + + W+ ++++I ++V  C  CQ  K+   KP G LQP+   E  WE +SMDFIT LP ++ GY  ++
Subjt:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW

Query:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS
        V++DR +K A  +P   + T E+ A+++   ++   G P  I++D D  FTS
Subjt:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS

P0CT35 Transposon Tf2-2 polyprotein7.5e-2627.38Show/hide
Query:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP
        AN +ADALSR       ++     I  D E   I          + Q+++    + +++ E  ND  L+   +  +        L   L +  + ++ +P
Subjt:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP

Query:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW
         +  L + ++ + H     IHPG   + + + + + W+ ++++I ++V  C  CQ  K+   KP G LQP+   E  WE +SMDFIT LP ++ GY  ++
Subjt:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW

Query:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS
        V++DR +K A  +P   + T E+ A+++   ++   G P  I++D D  FTS
Subjt:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS

P0CT36 Transposon Tf2-3 polyprotein7.5e-2627.38Show/hide
Query:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP
        AN +ADALSR       ++     I  D E   I          + Q+++    + +++ E  ND  L+   +  +        L   L +  + ++ +P
Subjt:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP

Query:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW
         +  L + ++ + H     IHPG   + + + + + W+ ++++I ++V  C  CQ  K+   KP G LQP+   E  WE +SMDFIT LP ++ GY  ++
Subjt:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW

Query:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS
        V++DR +K A  +P   + T E+ A+++   ++   G P  I++D D  FTS
Subjt:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS

P0CT41 Transposon Tf2-12 polyprotein7.5e-2627.38Show/hide
Query:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP
        AN +ADALSR       ++     I  D E   I          + Q+++    + +++ E  ND  L+   +  +        L   L +  + ++ +P
Subjt:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP

Query:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW
         +  L + ++ + H     IHPG   + + + + + W+ ++++I ++V  C  CQ  K+   KP G LQP+   E  WE +SMDFIT LP ++ GY  ++
Subjt:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW

Query:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS
        V++DR +K A  +P   + T E+ A+++   ++   G P  I++D D  FTS
Subjt:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS

Q9UR07 Transposon Tf2-11 polyprotein7.5e-2627.38Show/hide
Query:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP
        AN +ADALSR       ++     I  D E   I          + Q+++    + +++ E  ND  L+   +  +        L   L +  + ++ +P
Subjt:  ANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVVKRSQVEAGQGNEFSLSSDLGLCYQGRLCVP

Query:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW
         +  L + ++ + H     IHPG   + + + + + W+ ++++I ++V  C  CQ  K+   KP G LQP+   E  WE +SMDFIT LP ++ GY  ++
Subjt:  GNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEHISMDFITGLPRTAKGYTVIW

Query:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS
        V++DR +K A  +P   + T E+ A+++   ++   G P  I++D D  FTS
Subjt:  VIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGCCTCGACCCAAGGCCTTGGCCAACCACTCGACCGAGTTCGTTTGCCTCCGCTCGGTCCCAACTGCCTCTAGCTGTCCTGGTTCCGTCTGCCCGCAGTGCCGC
CCGCCGCAAGGCAAATGTGGTTGCAGATGCCCTCAGCAGGAAGACCGCTCATGCGTTTGTTTTGATTACTACTCAGGCTCATATATTGGATGACTTGGAACGTGCAGAGA
TTATGATTGCAGTGGGCGAAGTTACAGCACGCCTAGCTCAGTTGACAGTTAAGTCGAGCTTGAGACAGAGGATCATAGATGAACAACCAAATGACCCTGACCTTGTTGTT
AAACGCAGTCAAGTAGAGGCGGGACAGGGGAACGAGTTTTCCTTATCTTCAGACCTCGGCTTGTGTTACCAGGGTCGCTTATGCGTACCTGGGAATGCCGATCTCAAGCA
GGAATTATTAGTAGAGGCACATAATTCACCTTTTTCAATCCATCCAGGAAGTACGAAGATGTACCATGATTTGAAACAGTATTACTGGTGGCAGGACATGAAAAGAGAGA
TAGCGGATTTTGTCAGTAAATGCCTTGTCTGCCAACAGGTGAAAGCCCCGAGACAGAAACCAGCAGGCTTGTTGCAGCCGCTGAGTGTCCCAGAATGGAAGTGGGAGCAT
ATATCTATGGACTTCATCACAGGATTGCCTAGAACGGCCAAGGGTTACACCGTGATTTGGGTCATTATCGACAGACTCACCAAGTCAGCGCACTTTCTCCCTGGAAAGCC
TACTTACACTGTTGAGAAGTGGGCACAGTTATACATGACGGAGATAGTCAAGCTTCATGGGGTGCCGGTATCAATCGTGTCAGATAGAGACCCTCGGTTCACATCTAATT
TTGGAGGAGTTTGCAAAGAGCCTTGGGTACTCAGTTGCGTTTCAGTACAGCTTTTCACCCCCAGACAGATGGTCAGACTGAGCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGCCTCGACCCAAGGCCTTGGCCAACCACTCGACCGAGTTCGTTTGCCTCCGCTCGGTCCCAACTGCCTCTAGCTGTCCTGGTTCCGTCTGCCCGCAGTGCCGC
CCGCCGCAAGGCAAATGTGGTTGCAGATGCCCTCAGCAGGAAGACCGCTCATGCGTTTGTTTTGATTACTACTCAGGCTCATATATTGGATGACTTGGAACGTGCAGAGA
TTATGATTGCAGTGGGCGAAGTTACAGCACGCCTAGCTCAGTTGACAGTTAAGTCGAGCTTGAGACAGAGGATCATAGATGAACAACCAAATGACCCTGACCTTGTTGTT
AAACGCAGTCAAGTAGAGGCGGGACAGGGGAACGAGTTTTCCTTATCTTCAGACCTCGGCTTGTGTTACCAGGGTCGCTTATGCGTACCTGGGAATGCCGATCTCAAGCA
GGAATTATTAGTAGAGGCACATAATTCACCTTTTTCAATCCATCCAGGAAGTACGAAGATGTACCATGATTTGAAACAGTATTACTGGTGGCAGGACATGAAAAGAGAGA
TAGCGGATTTTGTCAGTAAATGCCTTGTCTGCCAACAGGTGAAAGCCCCGAGACAGAAACCAGCAGGCTTGTTGCAGCCGCTGAGTGTCCCAGAATGGAAGTGGGAGCAT
ATATCTATGGACTTCATCACAGGATTGCCTAGAACGGCCAAGGGTTACACCGTGATTTGGGTCATTATCGACAGACTCACCAAGTCAGCGCACTTTCTCCCTGGAAAGCC
TACTTACACTGTTGAGAAGTGGGCACAGTTATACATGACGGAGATAGTCAAGCTTCATGGGGTGCCGGTATCAATCGTGTCAGATAGAGACCCTCGGTTCACATCTAATT
TTGGAGGAGTTTGCAAAGAGCCTTGGGTACTCAGTTGCGTTTCAGTACAGCTTTTCACCCCCAGACAGATGGTCAGACTGAGCGATTGA
Protein sequenceShow/hide protein sequence
MVGLDPRPWPTTRPSSFASARSQLPLAVLVPSARSAARRKANVVADALSRKTAHAFVLITTQAHILDDLERAEIMIAVGEVTARLAQLTVKSSLRQRIIDEQPNDPDLVV
KRSQVEAGQGNEFSLSSDLGLCYQGRLCVPGNADLKQELLVEAHNSPFSIHPGSTKMYHDLKQYYWWQDMKREIADFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWEH
ISMDFITGLPRTAKGYTVIWVIIDRLTKSAHFLPGKPTYTVEKWAQLYMTEIVKLHGVPVSIVSDRDPRFTSNFGGVCKEPWVLSCVSVQLFTPRQMVRLSD