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Lag0021639 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021639
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr7:10381736..10382422
RNA-Seq ExpressionLag0021639
SyntenyLag0021639
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8676050.1 hypothetical protein F3Y22_tig00111634pilonHSYRG00035 [Hibiscus syriacus]3.6e-1141.03Show/hide
Query:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQYGMWLKKDP
        GD +R+R+R D  +PLRR + + I  NS+     +R+E+LP  CFGCG +GH +  C  +      KLQYG W++  P
Subjt:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQYGMWLKKDP

KAE8817564.1 hypothetical protein D1007_04663 [Hordeum vulgare]1.2e-1135.48Show/hide
Query:  EKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQYGMWLKK-DPAAKVNYKHKKGHSPNSN
        ++ KG+ +R+++RID  +PL RGM+++ G   +EEW    +E LP  C+ CG IGH +KEC  +++ + EK QYG WL+   P   V+ + ++ +   S 
Subjt:  EKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQYGMWLKK-DPAAKVNYKHKKGHSPNSN

Query:  QE-KSAGAEKGKARGGQQEESHSK
        Q  +S+G      R G   +S  K
Subjt:  QE-KSAGAEKGKARGGQQEESHSK

MCH80348.1 hypothetical protein [Trifolium medium]7.2e-1228.07Show/hide
Query:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP
        G  +R+R+ +D ++PL+RG   K+    +E WVD ++E+LP+ CF CG IGH  ++CEDIE         L+E++  +G WL+  P  K++Y+ KK  S 
Subjt:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP

Query:  NSNQEK----SAGAEKGKARGGQQEESHSKATRDVQPTHLYDHRRNSSPEKMEGSGTTEREKTTRKTASLEIRNSEDRMMIDETPQIKGTNPKMTDKGKE
        +SN  K    S    KG+  G  +E       + V        +        +  G T +++  +K   +   +     +  +T   +GT      KG+ 
Subjt:  NSNQEK----SAGAEKGKARGGQQEESHSKATRDVQPTHLYDHRRNSSPEKMEGSGTTEREKTTRKTASLEIRNSEDRMMIDETPQIKGTNPKMTDKGKE

Query:  KVGAAGTRQKERKRWRLM-LIGPTKLMD
         V    T+ K +K  + +  IG   L+D
Subjt:  KVGAAGTRQKERKRWRLM-LIGPTKLMD

MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]2.7e-1131.33Show/hide
Query:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP
        G  +RIR+ +D ++PL+RG   K+    ++ WVD ++E+LP+ CF CG IGH  ++CE++E         L+E+   +G WL+  P  KV Y+ K+  S 
Subjt:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP

Query:  NS-------NQEKSAGAEKGKARGGQQEESHSKATRDVQ-PTHLYDHRRNSSPE-KMEGSGTTERE
         +       +   S G   G A+  ++E    KAT + + P    D   N + E  +E  G+ ++E
Subjt:  NS-------NQEKSAGAEKGKARGGQQEESHSKATRDVQ-PTHLYDHRRNSSPE-KMEGSGTTERE

POO00252.1 Zinc finger, CCHC-type [Trema orientale]7.2e-1239.78Show/hide
Query:  GKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQ----YGMWLKKDPAAKVNYKHK
        G G  +RI + +D  +PL+RGM+IK+    E  W+D ++E+LPDLCF CG  GH    C+D+ A++E  L+    YG WLK       +Y+++
Subjt:  GKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQ----YGMWLKKDPAAKVNYKHK

TrEMBL top hitse value%identityAlignment
A0A2P5FR48 Zinc finger, CCHC-type3.5e-1239.78Show/hide
Query:  GKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQ----YGMWLKKDPAAKVNYKHK
        G G  +RI + +D  +PL+RGM+IK+    E  W+D ++E+LPDLCF CG  GH    C+D+ A++E  L+    YG WLK       +Y+++
Subjt:  GKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQ----YGMWLKKDPAAKVNYKHK

A0A392M033 CCHC-type domain-containing protein (Fragment)3.5e-1228.07Show/hide
Query:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP
        G  +R+R+ +D ++PL+RG   K+    +E WVD ++E+LP+ CF CG IGH  ++CEDIE         L+E++  +G WL+  P  K++Y+ KK  S 
Subjt:  GDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIE--------ALKEEKLQYGMWLKKDPAAKVNYKHKKGHSP

Query:  NSNQEK----SAGAEKGKARGGQQEESHSKATRDVQPTHLYDHRRNSSPEKMEGSGTTEREKTTRKTASLEIRNSEDRMMIDETPQIKGTNPKMTDKGKE
        +SN  K    S    KG+  G  +E       + V        +        +  G T +++  +K   +   +     +  +T   +GT      KG+ 
Subjt:  NSNQEK----SAGAEKGKARGGQQEESHSKATRDVQPTHLYDHRRNSSPEKMEGSGTTEREKTTRKTASLEIRNSEDRMMIDETPQIKGTNPKMTDKGKE

Query:  KVGAAGTRQKERKRWRLM-LIGPTKLMD
         V    T+ K +K  + +  IG   L+D
Subjt:  KVGAAGTRQKERKRWRLM-LIGPTKLMD

A0A803P119 Uncharacterized protein7.7e-1244.94Show/hide
Query:  MEKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEE------KLQYGMWLKKDP
        +E+G G  MRIRI +D  QPL RG ++KI    ++ WV +++EKLPD+C+ CG +GH    C  IE L+ E       L YG W+K DP
Subjt:  MEKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEE------KLQYGMWLKKDP

A0A803PJK4 Uncharacterized protein1.0e-1139.78Show/hide
Query:  MEKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKEC----EDIEALKEEKLQYGMWLKKDPAAKVNY
        + +G G  +RIR+ ID  +PL RG M+      +E W++ R+E+LPD C+ CG IGH+  +C    E I+  KE  L YG W++  P  K  Y
Subjt:  MEKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKEC----EDIEALKEEKLQYGMWLKKDPAAKVNY

A0A803QHU2 Uncharacterized protein1.0e-1139.56Show/hide
Query:  KGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKEC----EDIEALKEEKLQYGMWLKKDPAAKVNY
        +G G  +RIR+++   +PL RG MIK+    +E WVD R+E+LP+ CF CG +GH  K C    E ++   ++  QYG W+K       NY
Subjt:  KGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKEC----EDIEALKEEKLQYGMWLKKDPAAKVNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAGGTAAGGGTGACTCGATGAGAATAAGAATCAGGATCGACACCCAACAACCTTTGAGGAGAGGCATGATGATCAAAATAGGATCCAATAGCGAAGAAGAGTG
GGTGGACATGAGGTTTGAGAAGCTTCCTGATTTGTGTTTCGGGTGTGGTACAATAGGACATCTATCGAAGGAGTGTGAAGATATTGAAGCCTTGAAGGAAGAAAAACTCC
AATATGGTATGTGGTTAAAGAAAGATCCTGCAGCAAAGGTGAATTACAAGCATAAAAAGGGACATTCACCAAATAGTAACCAAGAGAAGAGTGCAGGAGCAGAAAAAGGA
AAAGCTAGAGGTGGACAACAAGAAGAAAGCCACAGCAAAGCGACCAGAGACGTGCAACCAACACATTTGTACGACCACCGGCGGAACAGCTCACCAGAAAAAATGGAAGG
AAGCGGCACCACCGAAAGAGAGAAAACGACAAGAAAAACGGCTAGTCTGGAAATTAGAAACTCAGAGGACCGAATGATGATTGACGAGACTCCCCAAATCAAAGGCACAA
ATCCCAAAATGACAGATAAAGGAAAAGAAAAAGTGGGGGCAGCTGGGACAAGACAAAAAGAAAGGAAACGGTGGAGGCTAATGTTGATAGGGCCCACGAAGTTAATGGAT
TGGACAATGGGAAGGATCATAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAGGTAAGGGTGACTCGATGAGAATAAGAATCAGGATCGACACCCAACAACCTTTGAGGAGAGGCATGATGATCAAAATAGGATCCAATAGCGAAGAAGAGTG
GGTGGACATGAGGTTTGAGAAGCTTCCTGATTTGTGTTTCGGGTGTGGTACAATAGGACATCTATCGAAGGAGTGTGAAGATATTGAAGCCTTGAAGGAAGAAAAACTCC
AATATGGTATGTGGTTAAAGAAAGATCCTGCAGCAAAGGTGAATTACAAGCATAAAAAGGGACATTCACCAAATAGTAACCAAGAGAAGAGTGCAGGAGCAGAAAAAGGA
AAAGCTAGAGGTGGACAACAAGAAGAAAGCCACAGCAAAGCGACCAGAGACGTGCAACCAACACATTTGTACGACCACCGGCGGAACAGCTCACCAGAAAAAATGGAAGG
AAGCGGCACCACCGAAAGAGAGAAAACGACAAGAAAAACGGCTAGTCTGGAAATTAGAAACTCAGAGGACCGAATGATGATTGACGAGACTCCCCAAATCAAAGGCACAA
ATCCCAAAATGACAGATAAAGGAAAAGAAAAAGTGGGGGCAGCTGGGACAAGACAAAAAGAAAGGAAACGGTGGAGGCTAATGTTGATAGGGCCCACGAAGTTAATGGAT
TGGACAATGGGAAGGATCATAAATTAA
Protein sequenceShow/hide protein sequence
MEKGKGDSMRIRIRIDTQQPLRRGMMIKIGSNSEEEWVDMRFEKLPDLCFGCGTIGHLSKECEDIEALKEEKLQYGMWLKKDPAAKVNYKHKKGHSPNSNQEKSAGAEKG
KARGGQQEESHSKATRDVQPTHLYDHRRNSSPEKMEGSGTTEREKTTRKTASLEIRNSEDRMMIDETPQIKGTNPKMTDKGKEKVGAAGTRQKERKRWRLMLIGPTKLMD
WTMGRIIN