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Lag0021738 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021738
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr7:11321229..11321880
RNA-Seq ExpressionLag0021738
SyntenyLag0021738
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-1328.21Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF
        W  ++ L    P L+ LS  K+ ++ E WNP +  W+L + R L + +   W ++  +L     N       W L +              E P     F
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF

Query:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL
         H N +KT           F      H CINTAD +Q++     LSP+ C MC K+QE   HLF +C ++   WS  +    W  + P D+ +L+
Subjt:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1127.69Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF
        W  ++ L    P L+ LS  K+ ++ + WNP +  W+L + R L + +   W ++  +L     N       W L +              E P     F
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF

Query:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL
         H N +KT           F      H CINTAD +Q++     LSP+ C MC K+QE   HLF +C ++   WS  +    W    P D+ +L+
Subjt:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-1230.39Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------
        W ++  L  QFP LY LS  + AT+ E+W+  +  WN++ RR L E +   W S+  +L     N        N  DS  + + +  ++ +K        
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------

Query:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS
                LW      SH   K   F++T  H   +NT D IQ++N + +L+PS CI C  + E   HLF +C FA   W+
Subjt:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1127.69Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF
        W  ++ L    P L+ LS  K+ ++ + WNP +  W+L + R L + +   W ++  +L     N       W L +              E P     F
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF

Query:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL
         H N +KT           F      H CINTAD +Q++     LSP+ C MC K+QE   HLF +C ++   WS  +    W    P D+ +L+
Subjt:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL

XP_026453629.1 uncharacterized protein LOC113354505 [Papaver somniferum]7.1e-1332.22Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELW---NPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTED--SWFWCLGNCGEM---------PWKLW
        WL    LK  FP+LYN+S KK   +++ +      + +WNL LRR L++ +I E  +LSH L N ++N  ED  +W W       +         P    
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELW---NPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTED--SWFWCLGNCGEM---------PWKLW

Query:  IFLHR-----NSHKTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFG
         F H+     N      F     HH  + T D ++RK     L   CC MC K  ET  HLF +C  A + W      FG
Subjt:  IFLHR-----NSHKTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFG

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.5e-1328.21Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF
        W  ++ L    P L+ LS  K+ ++ E WNP +  W+L + R L + +   W ++  +L     N       W L +              E P     F
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF

Query:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL
         H N +KT           F      H CINTAD +Q++     LSP+ C MC K+QE   HLF +C ++   WS  +    W  + P D+ +L+
Subjt:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein6.5e-1227.69Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF
        W  ++ L    P L+ LS  K+ ++ + WNP +  W+L + R L + +   W ++  +L     N       W L +              E P     F
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGN------------CGEMPWKLWIF

Query:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL
         H N +KT           F      H CINTAD +Q++     LSP+ C MC K+QE   HLF +C ++   WS  +    W    P D+ +L+
Subjt:  LHRNSHKTF---------GFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLL

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein6.5e-1229.83Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------
        W ++  L  Q P LY LS  + AT+ E+W+  +  WN++ RR L E +   W S+  +L     N        N  DS  + + +  ++ +K        
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------

Query:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS
                LW      SH   K   F++T  H   +NT D IQ++N + +L+PS CI C  + E   HLF +C FA + W+
Subjt:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein1.7e-1230.39Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------
        W ++  L  QFP LY LS  + AT+ E+W+  +  WN++ RR L E +   W S+  +L     N        N  DS  + + +  ++ +K        
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------

Query:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS
                LW      SH   K   F++T  H   +NT D IQ++N + +L+PS CI C  + E   HLF +C FA   W+
Subjt:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein6.5e-1229.83Show/hide
Query:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------
        W ++  L  Q P LY LS  + AT+ E+W+  +  WN++ RR L E +   W S+  +L     N        N  DS  + + +  ++ +K        
Subjt:  WLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSIN--------NTEDSWFWCLGNCGEMPWK--------

Query:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS
                LW      SH   K   F++T  H   +NT D IQ++N + +L+PS CI C  + E   HLF +C FA + W+
Subjt:  --------LWIFLHRNSH---KTFGFLFTAQHHACINTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTCGACTCATCTCTCCTCAAGACCCAGTTCCCATCATTGTATAACTTGTCTCTCAAAAAGGAGGCTACGATTGCTGAATTATGGAATCCGATTAATGGCTCTTG
GAACTTACAATTGAGAAGGAACCTTACAGAAGAGGATATTCTTGAGTGGGCTTCTTTATCTCACAATCTCACCAATTTCTCCATAAATAATACTGAAGACTCTTGGTTTT
GGTGCCTTGGAAATTGTGGAGAAATGCCTTGGAAATTATGGATTTTTCTCCACAGGAACTCTCACAAGACATTTGGCTTCCTCTTCACAGCACAACATCATGCTTGTATC
AATACTGCGGATATGATTCAAAGAAAAAATCATGCATCTAATCTATCTCCCAGCTGCTGTATCATGTGTTACAAAGCCCAAGAGACTCAAGCTCACTTATTTAACTACTG
TGATTTTGCATCAGCCTTTTGGAGCTATCTTCAACAAGCCTTTGGATGGCAATGTGCCTGGCCTGCGGATATCCACACTCTTCTATCTTTTGCCATTGTTGGTCATCCCT
TTAGAAAGGACAAAAAATCATCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCTCGACTCATCTCTCCTCAAGACCCAGTTCCCATCATTGTATAACTTGTCTCTCAAAAAGGAGGCTACGATTGCTGAATTATGGAATCCGATTAATGGCTCTTG
GAACTTACAATTGAGAAGGAACCTTACAGAAGAGGATATTCTTGAGTGGGCTTCTTTATCTCACAATCTCACCAATTTCTCCATAAATAATACTGAAGACTCTTGGTTTT
GGTGCCTTGGAAATTGTGGAGAAATGCCTTGGAAATTATGGATTTTTCTCCACAGGAACTCTCACAAGACATTTGGCTTCCTCTTCACAGCACAACATCATGCTTGTATC
AATACTGCGGATATGATTCAAAGAAAAAATCATGCATCTAATCTATCTCCCAGCTGCTGTATCATGTGTTACAAAGCCCAAGAGACTCAAGCTCACTTATTTAACTACTG
TGATTTTGCATCAGCCTTTTGGAGCTATCTTCAACAAGCCTTTGGATGGCAATGTGCCTGGCCTGCGGATATCCACACTCTTCTATCTTTTGCCATTGTTGGTCATCCCT
TTAGAAAGGACAAAAAATCATCTGGCTGA
Protein sequenceShow/hide protein sequence
MWLDSSLLKTQFPSLYNLSLKKEATIAELWNPINGSWNLQLRRNLTEEDILEWASLSHNLTNFSINNTEDSWFWCLGNCGEMPWKLWIFLHRNSHKTFGFLFTAQHHACI
NTADMIQRKNHASNLSPSCCIMCYKAQETQAHLFNYCDFASAFWSYLQQAFGWQCAWPADIHTLLSFAIVGHPFRKDKKSSG