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Lag0021765 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021765
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr7:11664188..11664538
RNA-Seq ExpressionLag0021765
SyntenyLag0021765
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]2.5e-0538.33Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLET--QGGRGNWHNNNRG-GRSGGFDNNRGGRGVCSG------FFPQNRPSPSGNTPPSLPQGQYSNKVTCQ
        +K EE  +E   K + S   P   MA N        RG   +N  G GR  G  +NRGGR    G      F   N P P+     S  +  YS+ V CQ
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLET--QGGRGNWHNNNRG-GRSGGFDNNRGGRGVCSG------FFPQNRPSPSGNTPPSLPQGQYSNKVTCQ

Query:  ICHRYGHNALDCYNRMNYSY
        IC++ GH+ALDCY+RM++SY
Subjt:  ICHRYGHNALDCYNRMNYSY

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]1.5e-0536.8Show/hide
Query:  MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQ
        ++ EESAL KQSK D+S N P          L+ A        RGN H  N G     FD    G G+      + +P              + N  TCQ
Subjt:  MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQ

Query:  ICHRYGHNALDCYNRMNYSYPQGQY
        IC R GH ALDC+NRMNY++ QG++
Subjt:  ICHRYGHNALDCYNRMNYSYPQGQY

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]9.6e-0537.84Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA
        +K EESAL KQSK D+    P   +A++         ++NN   GR  G  +  G    CS F  Q R   S      +    +S   +CQIC R GH A
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA

Query:  LDCYNRMNYSY
        LDC+NRMNY++
Subjt:  LDCYNRMNYSY

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]1.5e-0536.8Show/hide
Query:  MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQ
        ++ EESAL KQSK D+S N P          L+ A        RGN H  N G     FD    G G+      + +P              + N  TCQ
Subjt:  MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQ

Query:  ICHRYGHNALDCYNRMNYSYPQGQY
        IC R GH ALDC+NRMNY++ QG++
Subjt:  ICHRYGHNALDCYNRMNYSYPQGQY

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]3.2e-0839.66Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA
        MK+EESA+EKQ K ++ +  P+   A++ ++Q     +H N    R  G +N RG       F  Q R   SGN   S    Q  N+  CQIC + GH A
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA

Query:  LDCYNRMNYSYPQGQY
        LDCYNRMN+ + QG++
Subjt:  LDCYNRMNYSYPQGQY

TrEMBL top hitse value%identityAlignment
A0A2N9FVX0 Reverse transcriptase Ty1/copia-type domain-containing protein1.5e-0837.41Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLET------------------QGGRGNWHNNNRGGRSGGFD---NNRGGRGVCS------GFFPQNRPSPSG
        M T+E  L+   +  +  +I  +AMAAN  T                    GRGN++   RGG  GGF    +N+G +G  S      GFFPQ+   P+ 
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLET------------------QGGRGNWHNNNRGGRSGGFD---NNRGGRGVCS------GFFPQNRPSPSG

Query:  NTPPSLPQ----GQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY
        N P S           N+ TCQIC++ GH ALDCYNRMN+SY QG++
Subjt:  NTPPSLPQ----GQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY

A0A2N9G6F0 Uncharacterized protein1.2e-0841.04Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLETQ----GGRGNWHNNNRGGRSGGFDN-NRGGRGVCSGFFPQNRPSPSGN---------TPPSLPQGQY--
        MKTEE  L  +S +D +  I H+AMAA   +Q    G RG   N  RG R G F + NRGG     GF   N  S +GN          P +    Q+  
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLETQ----GGRGNWHNNNRGGRSGGFDN-NRGGRGVCSGFFPQNRPSPSGN---------TPPSLPQGQY--

Query:  --SNKVTCQICHRYGHNALDCYNRMNYSYPQGQY
          S++ TCQIC++ GH A+DCY RMNY+Y QG++
Subjt:  --SNKVTCQICHRYGHNALDCYNRMNYSYPQGQY

A0A2N9GXQ8 Uncharacterized protein1.7e-1043.48Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLETQG--------------GRGNWHNNNRGGRSGGFDNNRGGRGVCS-------GFFPQNRP-SPSGNTPPS
        MKTEE  L+  S  D S  I H+AM AN  +Q               GRG   N  RGG SG F N   GRG  S       G FP   P SP+  + PS
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLETQG--------------GRGNWHNNNRGGRSGGFDNNRGGRGVCS-------GFFPQNRP-SPSGNTPPS

Query:  LPQGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY
         P    S++ TCQIC++ GH A+DCY RMNYSY QG++
Subjt:  LPQGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY

A0A2N9H9M1 Uncharacterized protein2.6e-0840.14Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAAN-LETQGGRGNWHN------------NNRGGRS--------GGFDNNRGGRGVCSGFFPQ---NRPSPSGNTP
        M T+E  L+      +  +I  +AMAAN +     RGN+HN            NNRGG S        GG+  + GG       FPQ   N P  S N P
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAAN-LETQGGRGNWHN------------NNRGGRS--------GGFDNNRGGRGVCSGFFPQ---NRPSPSGNTP

Query:  PSLP--QGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY
         S P       N+  CQIC++ GHNALDCYNRMNYSY QG++
Subjt:  PSLP--QGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY

A0A6J1D9L6 uncharacterized protein LOC1110188921.5e-0839.66Show/hide
Query:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA
        MK+EESA+EKQ K ++ +  P+   A++ ++Q     +H N    R  G +N RG       F  Q R   SGN   S    Q  N+  CQIC + GH A
Subjt:  MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNA

Query:  LDCYNRMNYSYPQGQY
        LDCYNRMN+ + QG++
Subjt:  LDCYNRMNYSYPQGQY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACAGAGGAGTCCGCACTGGAGAAACAATCCAAGGTTGATGAGTCTCTCAATATTCCTCATCTTGCTATGGCTGCAAATCTTGAAACTCAAGGAGGCCGTGGAAA
CTGGCACAATAACAATCGAGGAGGTCGCAGTGGCGGATTTGATAATAATCGTGGTGGTCGGGGCGTTTGCAGTGGCTTCTTTCCTCAAAACAGACCTTCACCGTCTGGTA
ATACTCCTCCTTCACTTCCTCAAGGTCAGTATTCCAATAAGGTAACTTGCCAGATTTGTCATCGGTATGGACACAATGCCCTAGACTGCTACAATCGTATGAATTACTCA
TACCCTCAAGGTCAGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGACAGAGGAGTCCGCACTGGAGAAACAATCCAAGGTTGATGAGTCTCTCAATATTCCTCATCTTGCTATGGCTGCAAATCTTGAAACTCAAGGAGGCCGTGGAAA
CTGGCACAATAACAATCGAGGAGGTCGCAGTGGCGGATTTGATAATAATCGTGGTGGTCGGGGCGTTTGCAGTGGCTTCTTTCCTCAAAACAGACCTTCACCGTCTGGTA
ATACTCCTCCTTCACTTCCTCAAGGTCAGTATTCCAATAAGGTAACTTGCCAGATTTGTCATCGGTATGGACACAATGCCCTAGACTGCTACAATCGTATGAATTACTCA
TACCCTCAAGGTCAGTATTAA
Protein sequenceShow/hide protein sequence
MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYS
YPQGQY