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Lag0021819 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021819
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr7:12584367..12584933
RNA-Seq ExpressionLag0021819
SyntenyLag0021819
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453480.1 reverse transcriptase [Gossypium australe]1.9e-2645.26Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE--AKGH
        MK  CWN +GL SPR  R +  +++   PHL F+ E+K+  K  +  +   GF   I VE  G  G LCL W+D + V LRS S++HIDV+IKE   +  
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE--AKGH

Query:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        WRFTGFYG P V  + + WNLL RL       WLV G
Subjt:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

KAA3469443.1 reverse transcriptase [Gossypium australe]5.0e-2747.06Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE-AKGHW
        MK+LCWNV GL SPR  R +  +V+  +PHL F+ E+K+  K+  + + K GF   I VE  G  G LC+ WK+ + V LRS SR+HIDV+I++  +  W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE-AKGHW

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        R+TGFYG P +  +   WNLLRRL     L WLV G
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

KAA3485417.1 reverse transcriptase [Gossypium australe]7.2e-2642.34Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEA--KGH
        MKT+CWNV+GL SPR  R +  + +  +PH+ F+ E+K+  K+    + +  F     +E  G  G LCL WKD + V LRS S++HID ++ E   +  
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEA--KGH

Query:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        WRFTGFYG P    R   W+LL+RL    S  WLV G
Subjt:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

XP_024021734.1 uncharacterized protein LOC112091706 [Morus notabilis]3.8e-2744.85Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKG-HW
        M  + WNV+GL +PR F  +  ++R  SP L F+ E+++  K A   K + GF G   V+C G+SG L L WK+ +EV ++S S+ HID  ++   G  W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKG-HW

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        RFTGFYG+P  S R HSW LL RL+S  +L W+V G
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

XP_041001573.1 uncharacterized protein LOC121247264 [Juglans microcarpa x Juglans regia]2.9e-2745.59Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIK-EAKGHW
        MKT+CWN  GL +P   R +  ++      L F+ E+K+  +     K+K+GF     ++ VG+SG L L W   L V L+S SR+HIDV IK E    W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIK-EAKGHW

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        RFTG YG+PEVSSRC +WNL+R L S   + WL+GG
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

TrEMBL top hitse value%identityAlignment
A0A5B6U6G4 Reverse transcriptase9.2e-2745.26Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE--AKGH
        MK  CWN +GL SPR  R +  +++   PHL F+ E+K+  K  +  +   GF   I VE  G  G LCL W+D + V LRS S++HIDV+IKE   +  
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE--AKGH

Query:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        WRFTGFYG P V  + + WNLL RL       WLV G
Subjt:  WRFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

A0A5B6VK35 Reverse transcriptase2.4e-2747.06Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE-AKGHW
        MK+LCWNV GL SPR  R +  +V+  +PHL F+ E+K+  K+  + + K GF   I VE  G  G LC+ WK+ + V LRS SR+HIDV+I++  +  W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKE-AKGHW

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        R+TGFYG P +  +   WNLLRRL     L WLV G
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

A0A803PBM9 Uncharacterized protein1.4e-2745.59Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W
        MK L WNVQGL +P T R +  +V    P L F+SES++   KA   +  +G++G  VVE  GKSG L L W + ++  + S S FHID  I++ +G  W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        RFTGFYGDP+ + RC SW LL R+    S  W++GG
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

A0A803PPS5 Uncharacterized protein1.8e-2747.79Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W
        MKTL WNVQG+ +P T R++   V   +P L F+SES++   KA E +  +GF G  VVE +GKSGDL L W   +   +RS S FHID  IKE     W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        RFTGFYGDP+ + R  SW LL R+    S  W++ G
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

A0A803PTM0 Uncharacterized protein3.4e-2949.26Show/hide
Query:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W
        M  L WN QGL +P T R++  +V   SP + F++ESKIG  +A   + K+GF G  VVE  GKSG L L W   +E  + S S FHID  ++   G  W
Subjt:  MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGH-W

Query:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG
        RFTGFYGDP+ S RCHSW LLRR+    S  W VGG
Subjt:  RFTGFYGDPEVSSRCHSWNLLRRLRSCGSLSWLVGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCTTATGCTGGAATGTTCAAGGATTAGAGAGCCCTCGAACATTCAGGAATGTGCACCAAGTGGTGCGAGCAGTGAGTCCCCATCTGTTCTTTGTGTCAGAATC
GAAGATTGGAGGGAAGAAAGCAAATGAGTACAAGTGGAAGATGGGTTTTGAAGGTGTTATTGTAGTTGAGTGTGTGGGGAAGAGCGGTGACCTTTGCTTATTTTGGAAGG
ATAGCTTGGAGGTGGTCCTGAGATCCATGAGTAGGTTCCATATTGATGTAGTTATAAAGGAGGCAAAGGGGCATTGGAGATTTACGGGTTTCTATGGAGATCCGGAGGTG
AGTAGCAGGTGCCACTCATGGAATTTGTTGCGGAGGCTTCGTAGTTGTGGATCCTTGTCATGGTTGGTTGGTGGGATTTCAATGAGCTTCTTAGTCAGGATGAGAAGTTG
GGAGGTTATCTGCGTAGCCAAATCTAAATGCAATCCTTCAGGGATGCAGTTGATGATTGCGATCTTGTGGGCAAGGGCTTCAAGGGTTTTCCCTTCACCTGGTATAAAAC
GAAGAATAGGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCTTATGCTGGAATGTTCAAGGATTAGAGAGCCCTCGAACATTCAGGAATGTGCACCAAGTGGTGCGAGCAGTGAGTCCCCATCTGTTCTTTGTGTCAGAATC
GAAGATTGGAGGGAAGAAAGCAAATGAGTACAAGTGGAAGATGGGTTTTGAAGGTGTTATTGTAGTTGAGTGTGTGGGGAAGAGCGGTGACCTTTGCTTATTTTGGAAGG
ATAGCTTGGAGGTGGTCCTGAGATCCATGAGTAGGTTCCATATTGATGTAGTTATAAAGGAGGCAAAGGGGCATTGGAGATTTACGGGTTTCTATGGAGATCCGGAGGTG
AGTAGCAGGTGCCACTCATGGAATTTGTTGCGGAGGCTTCGTAGTTGTGGATCCTTGTCATGGTTGGTTGGTGGGATTTCAATGAGCTTCTTAGTCAGGATGAGAAGTTG
GGAGGTTATCTGCGTAGCCAAATCTAAATGCAATCCTTCAGGGATGCAGTTGATGATTGCGATCTTGTGGGCAAGGGCTTCAAGGGTTTTCCCTTCACCTGGTATAAAAC
GAAGAATAGGAAGATAG
Protein sequenceShow/hide protein sequence
MKTLCWNVQGLESPRTFRNVHQVVRAVSPHLFFVSESKIGGKKANEYKWKMGFEGVIVVECVGKSGDLCLFWKDSLEVVLRSMSRFHIDVVIKEAKGHWRFTGFYGDPEV
SSRCHSWNLLRRLRSCGSLSWLVGGISMSFLVRMRSWEVICVAKSKCNPSGMQLMIAILWARASRVFPSPGIKRRIGR