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Lag0021854 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021854
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr7:13035419..13037891
RNA-Seq ExpressionLag0021854
SyntenyLag0021854
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.9e-3032.31Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIP------------------------NSLM--------------
        + F LT EE+   VD+D  A   T + L  SLI KLL  R IS  +++ T K AW +                         N ++              
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIP------------------------NSLM--------------

Query:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE
          P+ + KP  M+F+  + WVHF DL +   N++MA RLGN IG F + ++    + W   LR R+  D+  P    IK+ LD P+G  W PI YE+LP+
Subjt:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE

Query:  ICSYCGRIGHVTNDCNFSFIDDGSEGLEF
           +CGR+ H+  DC+   +D  S+ L++
Subjt:  ICSYCGRIGHVTNDCNFSFIDDGSEGLEF

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.0e-3436.07Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMP---------------------------------IPMV
        ++F LT EE+   +DVD  A  +  Q L +SL+ KLL  R IS D++ R    AW + + L                                   I + 
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMP---------------------------------IPMV

Query:  KP------TAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEI
        KP      + +EF    FW+H  DLPM   N++MA RLGN IG F + D   +G+ W  SLR R++IDIT P R  IK+ +D P+G  W PI YE+LP+ 
Subjt:  KP------TAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEI

Query:  CSYCGRIGHVTNDCNFSFI
        C +CG IGH ++DC+  ++
Subjt:  CSYCGRIGHVTNDCNFSFI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.7e-2632.52Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLM--------------------------------------
        + F LT EEE T +DVD  A   T   L   L+ KL + R I+  +M+ T ++AW + N+                                        
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLM--------------------------------------

Query:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE
          P+ ++ P+ ++F     WV F DLP+    R MA RLGN +G F E D       W  +LR R+++DI+ P R  IK+ LD P+G  W PI YE+LP+
Subjt:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE

Query:  ICSYCG
         C +CG
Subjt:  ICSYCG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.9e-1732.87Show/hide
Query:  FISGDIM--RRTFKSA-WNIPNSLMPI----PMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCP
        F+ G ++  RR      W     L+ +    P V+P+ ++     FWVH C+LP+ L N+ + E +GN +GQF + D    G  W  ++R R+ +D+  P
Subjt:  FISGDIM--RRTFKSA-WNIPNSLMPI----PMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCP

Query:  FRHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCN
         R  +K+ L      IW    YE+LP  C +CGR+GH   +C+
Subjt:  FRHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCN

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]3.0e-1834.21Show/hide
Query:  FISGDIM--RRTFKSA-WNIPNSLMPI----PMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCP
        F+ G ++  RR   +  W     L+ +    P V+P+ ++     FWVH C+LP+ L N+ + + +GN +GQF + D    G  W  ++R R+ ID+  P
Subjt:  FISGDIM--RRTFKSA-WNIPNSLMPI----PMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCP

Query:  FRHDIKVCLD--DPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCN--FSFID
         R  +K+ L   DP   IW    YE+LP  C +CGR+GH   +C+   SF D
Subjt:  FRHDIKVCLD--DPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCN--FSFID

TrEMBL top hitse value%identityAlignment
A0A1R3HK95 Zinc finger, CCHC-type1.0e-1637.41Show/hide
Query:  GDIMRRTFKSAWNIPNSLMPIPM----VKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIK
        GD  R    S W   N+L+        ++P    F  A FW+   DL +    R MAE +G  IG+  + D    G GW + LR R+ ID+T P R  I 
Subjt:  GDIMRRTFKSAWNIPNSLMPIPM----VKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIK

Query:  VCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNF-SFIDDGSE
        V  DD  G+I   + YE+ P  C  CGRIGHV+ DC+    I +G E
Subjt:  VCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNF-SFIDDGSE

A0A2N9H4E7 Uncharacterized protein7.9e-1731.61Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMPIPMV-----KPTAMEFKFATFWVHFCDLPMDLYNRSM
        ++F+L+ EEE   V+++      T +   FSL+ KLL P+  + +  ++   + W   +      M      K        A+FWV   DLPM   N   
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMPIPMV-----KPTAMEFKFATFWVHFCDLPMDLYNRSM

Query:  AERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPF--RHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNFSFIDDGSEG
        A R+G  +G   E D    G+ W E +R R+ +DIT P   R  +K+  D P   IW  + YEKLP  C  CGR+GH   +C      + S+G
Subjt:  AERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPF--RHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNFSFIDDGSEG

A0A6J1BSZ1 uncharacterized protein LOC1110054814.8e-3032.31Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIP------------------------NSLM--------------
        + F LT EE+   VD+D  A   T + L  SLI KLL  R IS  +++ T K AW +                         N ++              
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIP------------------------NSLM--------------

Query:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE
          P+ + KP  M+F+  + WVHF DL +   N++MA RLGN IG F + ++    + W   LR R+  D+  P    IK+ LD P+G  W PI YE+LP+
Subjt:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE

Query:  ICSYCGRIGHVTNDCNFSFIDDGSEGLEF
           +CGR+ H+  DC+   +D  S+ L++
Subjt:  ICSYCGRIGHVTNDCNFSFIDDGSEGLEF

A0A6J1DU55 uncharacterized protein LOC1110231351.4e-3436.07Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMP---------------------------------IPMV
        ++F LT EE+   +DVD  A  +  Q L +SL+ KLL  R IS D++ R    AW + + L                                   I + 
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMP---------------------------------IPMV

Query:  KP------TAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEI
        KP      + +EF    FW+H  DLPM   N++MA RLGN IG F + D   +G+ W  SLR R++IDIT P R  IK+ +D P+G  W PI YE+LP+ 
Subjt:  KP------TAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEI

Query:  CSYCGRIGHVTNDCNFSFI
        C +CG IGH ++DC+  ++
Subjt:  CSYCGRIGHVTNDCNFSFI

A0A6J1DX30 uncharacterized protein LOC1110248744.2e-2632.52Show/hide
Query:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLM--------------------------------------
        + F LT EEE T +DVD  A   T   L   L+ KL + R I+  +M+ T ++AW + N+                                        
Subjt:  ERFNLTVEEESTEVDVDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLM--------------------------------------

Query:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE
          P+ ++ P+ ++F     WV F DLP+    R MA RLGN +G F E D       W  +LR R+++DI+ P R  IK+ LD P+G  W PI YE+LP+
Subjt:  --PIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPE

Query:  ICSYCG
         C +CG
Subjt:  ICSYCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding1.2e-0422.94Show/hide
Query:  WVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNFSF
        WV   ++P + Y+R +   +   +G+  + D     +      R  I +++  P +  + +  D         + YE L +ICS CG  GH+ + C  + 
Subjt:  WVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFRIIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNFSF

Query:  IDDGSEGLE
        +   S G E
Subjt:  IDDGSEGLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGCCACGAGAGGTCTTCCGAAAATACCTCGTATTTTTCTATCAATATACTGGATACGCGGATTTTCGTATTTCTTCCGTCGATTTCGCTTTTAGTTATCACCC
TGATTTCGAAAATCTCCGGCCTGATTTTGTCAATACTTCAGCGTTGTTTCTTTTGCATCGATCATTCAGCGGTTGTCCTAAGATCGAATCCAGGCCGATTTCCAAAGATT
CACAAAATCAACAGTTTGATTTCCAGTGTGGTTATATTGGTGATGGCGGCAGCTTGATCTTCATCGAAAGATTCAATCTCACAGTTGAAGAGGAATCTACTGAAGTTGAT
GTTGATCGACAAGCGGCGCTGGTTACAAGTCAATTGCTAGGCTTCAGCCTAATCAGGAAATTGTTAGTCCCTCGATTTATCTCTGGCGATATAATGCGGCGCACCTTCAA
GTCCGCCTGGAACATCCCAAACAGTCTAATGCCAATTCCCATGGTGAAACCAACAGCTATGGAGTTCAAATTTGCAACCTTCTGGGTTCATTTTTGTGACTTACCAATGG
ATCTCTATAACCGATCAATGGCGGAAAGATTGGGCAATGTGATTGGTCAATTCCACGAGTATGACAATGGAGGGCGAGGATATGGCTGGAAGGAGAGTCTCAGATTTCGA
ATTATAATTGACATTACGTGTCCTTTCCGTCACGACATCAAGGTATGTCTTGACGATCCTTTGGGCAGCATTTGGACTCCCATCATATATGAAAAGCTACCAGAAATATG
TTCTTATTGCGGTCGGATAGGACATGTGACAAATGATTGTAATTTTTCCTTCATTGATGATGGTTCTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGG
ACCGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGCCACGAGAGGTCTTCCGAAAATACCTCGTATTTTTCTATCAATATACTGGATACGCGGATTTTCGTATTTCTTCCGTCGATTTCGCTTTTAGTTATCACCC
TGATTTCGAAAATCTCCGGCCTGATTTTGTCAATACTTCAGCGTTGTTTCTTTTGCATCGATCATTCAGCGGTTGTCCTAAGATCGAATCCAGGCCGATTTCCAAAGATT
CACAAAATCAACAGTTTGATTTCCAGTGTGGTTATATTGGTGATGGCGGCAGCTTGATCTTCATCGAAAGATTCAATCTCACAGTTGAAGAGGAATCTACTGAAGTTGAT
GTTGATCGACAAGCGGCGCTGGTTACAAGTCAATTGCTAGGCTTCAGCCTAATCAGGAAATTGTTAGTCCCTCGATTTATCTCTGGCGATATAATGCGGCGCACCTTCAA
GTCCGCCTGGAACATCCCAAACAGTCTAATGCCAATTCCCATGGTGAAACCAACAGCTATGGAGTTCAAATTTGCAACCTTCTGGGTTCATTTTTGTGACTTACCAATGG
ATCTCTATAACCGATCAATGGCGGAAAGATTGGGCAATGTGATTGGTCAATTCCACGAGTATGACAATGGAGGGCGAGGATATGGCTGGAAGGAGAGTCTCAGATTTCGA
ATTATAATTGACATTACGTGTCCTTTCCGTCACGACATCAAGGTATGTCTTGACGATCCTTTGGGCAGCATTTGGACTCCCATCATATATGAAAAGCTACCAGAAATATG
TTCTTATTGCGGTCGGATAGGACATGTGACAAATGATTGTAATTTTTCCTTCATTGATGATGGTTCTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGG
ACCGTTCGTAA
Protein sequenceShow/hide protein sequence
MGKPREVFRKYLVFFYQYTGYADFRISSVDFAFSYHPDFENLRPDFVNTSALFLLHRSFSGCPKIESRPISKDSQNQQFDFQCGYIGDGGSLIFIERFNLTVEEESTEVD
VDRQAALVTSQLLGFSLIRKLLVPRFISGDIMRRTFKSAWNIPNSLMPIPMVKPTAMEFKFATFWVHFCDLPMDLYNRSMAERLGNVIGQFHEYDNGGRGYGWKESLRFR
IIIDITCPFRHDIKVCLDDPLGSIWTPIIYEKLPEICSYCGRIGHVTNDCNFSFIDDGSEGLEFPIPLQRKQLDRS