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Lag0021877 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021877
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr7:13413286..13414338
RNA-Seq ExpressionLag0021877
SyntenyLag0021877
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

KAA0062227.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.0e-0950.79Show/hide
Query:  YRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        YR N  TK+ E+L+ W+GLP HE TWE   DF++QFP F LEDKVDL+      P +L++  R
Subjt:  YRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

TYK28129.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]6.0e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E+LV W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

TrEMBL top hitse value%identityAlignment
A0A5A7U2S1 Ty3/gypsy retrotransposon protein2.9e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

A0A5A7U6J3 Ty3/gypsy retrotransposon protein2.9e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

A0A5A7V573 Putative retroelement pol polyprotein2.9e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

A0A5D3CXB1 Ty3/gypsy retrotransposon protein2.9e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

A0A5D3DI73 Ty3/gypsy retrotransposon protein2.9e-0953.12Show/hide
Query:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER
        AYR N  TKE E LV+W+GLP HE TWE   D + QFP F LEDKVDL+      P +L++  R
Subjt:  AYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQ------PGVLWSLER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTATCGCTGGAACGACGAAACGAAAGAAATGGAGCTATTGGTTGAATGGCAAGGCTTACCGGAACACGAGGGGACATGGGAACGCGTCGAGGACTTCCGCAATCA
GTTTCCCACATTTCGCCTTGAGGACAAGGTCGATCTGCAGCCCGGGGTCCTTTGGAGCCTCGAGAGGTATTTTGTTGCTTTGGGTAGAAGGATGGTCTCCCTTGTAGGGG
TGGTTAAGGATTGCTTTTCGGTGTCCATATCCTTTCGGTCCAGAGACGATGAGTTGAGATGGGTGTCAGGGGTGTATGGCCCCCTAGGCAGAAAGGTAGGAAGGCTTTTT
GGGAAGAGTTGGGGGATCTCTTTGGCCTGTGCGGATCCTCTGGTGTGTGGCTGGGGACTTCAATGTCATTCGCTCTCCTTTCCTCAGGAGGGAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTATCGCTGGAACGACGAAACGAAAGAAATGGAGCTATTGGTTGAATGGCAAGGCTTACCGGAACACGAGGGGACATGGGAACGCGTCGAGGACTTCCGCAATCA
GTTTCCCACATTTCGCCTTGAGGACAAGGTCGATCTGCAGCCCGGGGTCCTTTGGAGCCTCGAGAGGTATTTTGTTGCTTTGGGTAGAAGGATGGTCTCCCTTGTAGGGG
TGGTTAAGGATTGCTTTTCGGTGTCCATATCCTTTCGGTCCAGAGACGATGAGTTGAGATGGGTGTCAGGGGTGTATGGCCCCCTAGGCAGAAAGGTAGGAAGGCTTTTT
GGGAAGAGTTGGGGGATCTCTTTGGCCTGTGCGGATCCTCTGGTGTGTGGCTGGGGACTTCAATGTCATTCGCTCTCCTTTCCTCAGGAGGGAGGGTGA
Protein sequenceShow/hide protein sequence
MAYRWNDETKEMELLVEWQGLPEHEGTWERVEDFRNQFPTFRLEDKVDLQPGVLWSLERYFVALGRRMVSLVGVVKDCFSVSISFRSRDDELRWVSGVYGPLGRKVGRLF
GKSWGISLACADPLVCGWGLQCHSLSFPQEGG