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Lag0021880 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021880
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr7:13420914..13422297
RNA-Seq ExpressionLag0021880
SyntenyLag0021880
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0140513 - nuclear protein-containing complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]2.4e-0747.46Show/hide
Query:  RKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTII
        R S CG+KI IEE N  ++ ++EL++G +AWVRDCL+  +++   + FWRRR LET ++
Subjt:  RKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTII

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]8.0e-1944.8Show/hide
Query:  MRQVLIDRKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIF
        M ++ IDRK F +      +KI IEE N    G++ELD G +AWVRDCL+  +    S+ FW +RRLE  IIFFQV  N +G++ +LSLE FK+R+ +IF
Subjt:  MRQVLIDRKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIF

Query:  FLEGAKGKGRATMADEFLGFIYSSG
          EG++G G  ++A E    +  SG
Subjt:  FLEGAKGKGRATMADEFLGFIYSSG

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein5.4e-1350Show/hide
Query:  VELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIFFLEGAKGKGRATMADE
        +ELD G +A VRDCL   +       FW RR L+  IIFFQV  NARG++ +LSLE FK ++ +IF  +G+KGKGR + A+E
Subjt:  VELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIFFLEGAKGKGRATMADE

A0A0A0KGZ5 Uncharacterized protein6.2e-0941.89Show/hide
Query:  RKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNAR
        ++++    + CG+KI IEE N  + G++EL++G +AWV DCL+  +++   +GFW RR LE T IFFQ     R
Subjt:  RKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNAR

A0A0A0LY03 Uncharacterized protein7.1e-1339.22Show/hide
Query:  GCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIFFLEGAKGKGRATMADE
        G  +KI IEE N  K G+++LD+G   WV D L   +    S+G W+R++L+  IIFFQV  N   ++ ++SL+ FK R+ ++F  EG++  G  ++A E
Subjt:  GCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIFFLEGAKGKGRATMADE

Query:  FL
         L
Subjt:  FL

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X21.2e-0747.46Show/hide
Query:  RKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTII
        R S CG+KI IEE N  ++ ++EL++G +AWVRDCL+  +++   + FWRRR LET ++
Subjt:  RKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTII

A0A5D3CQQ0 Uncharacterized protein3.9e-1944.8Show/hide
Query:  MRQVLIDRKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIF
        M ++ IDRK F +      +KI IEE N    G++ELD G +AWVRDCL+  +    S+ FW +RRLE  IIFFQV  N +G++ +LSLE FK+R+ +IF
Subjt:  MRQVLIDRKTFTLRKSGCGKKISIEECNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIF

Query:  FLEGAKGKGRATMADEFLGFIYSSG
          EG++G G  ++A E    +  SG
Subjt:  FLEGAKGKGRATMADEFLGFIYSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGGGAGCTTCTTGCCATCTAATTGGATTTTTGTGGGGAT
GGTTGCAGTTGCAGAGCCCCTTTTCTGGGAAGATAGTTTCAGAACAAATAGGATTGAGAAACCTCCGGAATGTATACCATATGTTATGAAAAGAATGAGATATTCGGGTG
ACGCCATCTCCTTCCTTTTCAACGATGGAAAAATGAGGCAAGTACTTATAGATAGAAAAACGTTTACACTCCGTAAGAGTGGGTGTGGAAAGAAAATCTCGATTGAGGAA
TGCAATGACTCTAAAACAGGGAGGGTGGAGCTAGATGTGGGTATCGCGGCTTGGGTTCGAGATTGTCTATTGACGGTGTCTAAAGTTGGTCGTTCGGTGGGATTTTGGAG
AAGACGAAGGCTAGAGACAACAATTATATTTTTTCAAGTTCATTCAAATGCTAGAGGAAAATATGGTTTGCTATCGTTGGAACTTTTCAAAGACAGAAGAATCAAAATTT
TCTTTCTAGAGGGAGCGAAGGGGAAAGGCCGAGCCACTATGGCTGATGAATTCTTGGGCTTCATATATTCATCAGGGGTTGGAGAGATACGAAGGGCTCGGTACAGCAAT
AGCGGAATGGCTCAATGCCTCTTCGAGATGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGGGAGCTTCTTGCCATCTAATTGGATTTTTGTGGGGAT
GGTTGCAGTTGCAGAGCCCCTTTTCTGGGAAGATAGTTTCAGAACAAATAGGATTGAGAAACCTCCGGAATGTATACCATATGTTATGAAAAGAATGAGATATTCGGGTG
ACGCCATCTCCTTCCTTTTCAACGATGGAAAAATGAGGCAAGTACTTATAGATAGAAAAACGTTTACACTCCGTAAGAGTGGGTGTGGAAAGAAAATCTCGATTGAGGAA
TGCAATGACTCTAAAACAGGGAGGGTGGAGCTAGATGTGGGTATCGCGGCTTGGGTTCGAGATTGTCTATTGACGGTGTCTAAAGTTGGTCGTTCGGTGGGATTTTGGAG
AAGACGAAGGCTAGAGACAACAATTATATTTTTTCAAGTTCATTCAAATGCTAGAGGAAAATATGGTTTGCTATCGTTGGAACTTTTCAAAGACAGAAGAATCAAAATTT
TCTTTCTAGAGGGAGCGAAGGGGAAAGGCCGAGCCACTATGGCTGATGAATTCTTGGGCTTCATATATTCATCAGGGGTTGGAGAGATACGAAGGGCTCGGTACAGCAAT
AGCGGAATGGCTCAATGCCTCTTCGAGATGATTTAG
Protein sequenceShow/hide protein sequence
MVELLFDDIFKIERLNPDGKKFDKGSFLPSNWIFVGMVAVAEPLFWEDSFRTNRIEKPPECIPYVMKRMRYSGDAISFLFNDGKMRQVLIDRKTFTLRKSGCGKKISIEE
CNDSKTGRVELDVGIAAWVRDCLLTVSKVGRSVGFWRRRRLETTIIFFQVHSNARGKYGLLSLELFKDRRIKIFFLEGAKGKGRATMADEFLGFIYSSGVGEIRRARYSN
SGMAQCLFEMI