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Lag0021892 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021892
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr7:13607463..13608312
RNA-Seq ExpressionLag0021892
SyntenyLag0021892
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB66613.1 hypothetical protein L484_024909 [Morus notabilis]1.6e-0833.06Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT
        +++DIT P+RR +K+ L +    VWT +RYEKLPD C  CG+ GHGT++C    ++  +      YGSW++          +P     G +   V+R P 
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT

Query:  NLSSD------RGMKVMVVGP
            D      RGM++  + P
Subjt:  NLSSD------RGMKVMVVGP

EXB66629.1 hypothetical protein L484_024925 [Morus notabilis]5.5e-0933.06Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT
        +++DIT P+RR +K+ L +    VWT +RYEKLPD C  CG+ GHGT++C    ++  +      YGSW++          +P     G +   V+R P 
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT

Query:  NLSSD------RGMKVMVVGP
            D      RGM+++ + P
Subjt:  NLSSD------RGMKVMVVGP

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.4e-0944Show/hide
Query:  DITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSST
        D+  PL R IK+ LD P+G  W  ++YE+LPD    CGR+ H  KDCS   +   S S+N QYG W++F G  ++
Subjt:  DITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSST

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.2e-1346.15Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYL-SEGSSSQNHQYGSWIQFMGKSS
        ++IDIT PLRR IK+ +D P+G  W  ++YE+LPD C FCG IGH + DC   YL ++  S    +YG W++F+G  +
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYL-SEGSSSQNHQYGSWIQFMGKSS

XP_024018029.1 uncharacterized protein LOC112090594 [Morus notabilis]1.2e-0842.25Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQ
        +++DIT P+RR +K+ L +    VWT +RYEKLPD C  CG+ GHGT++C    ++  +      YGSW++
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQ

TrEMBL top hitse value%identityAlignment
A0A2N9F775 Reverse transcriptase domain-containing protein1.0e-0839.8Show/hide
Query:  GKCDWTILRVRLEGQRLQMEEEFKSPIIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQ-YGSWIQ
        G   W+ +R+R               +IIDI  PL R  KV L   +G  W S RYE+L + C +CGRI HG KDC  +  S GS S + Q YG+W++
Subjt:  GKCDWTILRVRLEGQRLQMEEEFKSPIIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQ-YGSWIQ

A0A6J1BSZ1 uncharacterized protein LOC1110054814.5e-0944Show/hide
Query:  DITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSST
        D+  PL R IK+ LD P+G  W  ++YE+LPD    CGR+ H  KDCS   +   S S+N QYG W++F G  ++
Subjt:  DITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSST

A0A6J1DU55 uncharacterized protein LOC1110231351.0e-1346.15Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYL-SEGSSSQNHQYGSWIQFMGKSS
        ++IDIT PLRR IK+ +D P+G  W  ++YE+LPD C FCG IGH + DC   YL ++  S    +YG W++F+G  +
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYL-SEGSSSQNHQYGSWIQFMGKSS

W9RBJ0 CCHC-type domain-containing protein2.7e-0933.06Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT
        +++DIT P+RR +K+ L +    VWT +RYEKLPD C  CG+ GHGT++C    ++  +      YGSW++          +P     G +   V+R P 
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT

Query:  NLSSD------RGMKVMVVGP
            D      RGM+++ + P
Subjt:  NLSSD------RGMKVMVVGP

W9RRS1 CCHC-type domain-containing protein7.7e-0933.06Show/hide
Query:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT
        +++DIT P+RR +K+ L +    VWT +RYEKLPD C  CG+ GHGT++C    ++  +      YGSW++          +P     G +   V+R P 
Subjt:  IIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMGKSSTVFCSPSSSPIGKNRSIVDRSPT

Query:  NLSSD------RGMKVMVVGP
            D      RGM++  + P
Subjt:  NLSSD------RGMKVMVVGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATCGGCAAGCCGCTGAGAGAGACTGGGAAATGCGATTGGACAATTCTAAGAGTTCGATTAGAGGGGCAGAGGCTACAGATGGAAGAAGAGTTTAAGAGTCCGAT
CATCATCGACATCACTTGCCCTCTCCGACGTTGCATCAAGGTGAGATTAGATGAACCATTGGGTAGTGTATGGACGTCGGTTCGATATGAGAAGCTACCGGACCTTTGTA
CCTTCTGTGGGCGAATTGGGCATGGCACGAAAGACTGTTCTTTTTTCTATCTTAGTGAAGGATCCTCATCACAGAATCACCAATATGGATCGTGGATTCAATTCATGGGT
AAGTCTTCTACAGTTTTTTGTTCACCAAGCTCTAGTCCGATAGGCAAAAATCGATCAATTGTGGATCGATCACCGACTAACCTGTCATCTGACCGAGGAATGAAAGTTAT
GGTGGTGGGTCCGAACGATGGTTCAGGGGAGATCGAGAAAATATCGTCGGTGACTGATTCCGGTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATCGGCAAGCCGCTGAGAGAGACTGGGAAATGCGATTGGACAATTCTAAGAGTTCGATTAGAGGGGCAGAGGCTACAGATGGAAGAAGAGTTTAAGAGTCCGAT
CATCATCGACATCACTTGCCCTCTCCGACGTTGCATCAAGGTGAGATTAGATGAACCATTGGGTAGTGTATGGACGTCGGTTCGATATGAGAAGCTACCGGACCTTTGTA
CCTTCTGTGGGCGAATTGGGCATGGCACGAAAGACTGTTCTTTTTTCTATCTTAGTGAAGGATCCTCATCACAGAATCACCAATATGGATCGTGGATTCAATTCATGGGT
AAGTCTTCTACAGTTTTTTGTTCACCAAGCTCTAGTCCGATAGGCAAAAATCGATCAATTGTGGATCGATCACCGACTAACCTGTCATCTGACCGAGGAATGAAAGTTAT
GGTGGTGGGTCCGAACGATGGTTCAGGGGAGATCGAGAAAATATCGTCGGTGACTGATTCCGGTAGCTGA
Protein sequenceShow/hide protein sequence
MLIGKPLRETGKCDWTILRVRLEGQRLQMEEEFKSPIIIDITCPLRRCIKVRLDEPLGSVWTSVRYEKLPDLCTFCGRIGHGTKDCSFFYLSEGSSSQNHQYGSWIQFMG
KSSTVFCSPSSSPIGKNRSIVDRSPTNLSSDRGMKVMVVGPNDGSGEIEKISSVTDSGS