; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0021895 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021895
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:13659661..13660368
RNA-Seq ExpressionLag0021895
SyntenyLag0021895
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]5.1e-3742.66Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+    +YD   DP+ HLD Y  W D +G  +A RCR F+ TLTG  R WF ++ ++SI SFKELARAFVTQF G  NR +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEER-------ESRGISVSDRH-----
           +SL+DY+ RF+ E L +EG  D V L   ISG++DE+L+ S G+    T+    +RAQ Y+S  EL+ SK++ +         R      RH     
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEER-------ESRGISVSDRH-----

Query:  RKDRGKRRRVEEGSRSKY
        R D G+ R V+   + K+
Subjt:  RKDRGKRRRVEEGSRSKY

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]8.7e-3741.26Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M V+VP KFK+    Q+D   D V HLDAY  WMD +G ++A +CR F+ TL+G AR WF ++ + SI SFK LA+AFVTQF+G R+R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKR-----
           +SL DY+ RF+ E L +EG  + V+L A +S ++DE L  S G+  P T+   ++RAQ+Y+SA E   SK+E    +    SD++R+  G +     
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKR-----

Query:  -RRVEEGSRSKYPQPMVEAEQRP
          + +  +R  +P+ +    Q P
Subjt:  -RRVEEGSRSKYPQPMVEAEQRP

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.9e-3946.97Show/hide
Query:  KFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQGPRKSLR
        KFK+    +YD   DP+ HLDAY  W D +   +A RCR F+ TLTG AR WF ++ + SI SFKELA AFVTQF+G R + KP   LLT+KQ   +SL+
Subjt:  KFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQGPRKSLR

Query:  DYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLK-SKQEERESRGISVSDRHRKDRGKRRRVEEGSRS
        +Y+ RF+ E L +EG  D VAL A +SG++DERL+ S G+  P T++  ++RAQ+Y+SA EL+  S+  ERE    S     R+ RG++R      RS
Subjt:  DYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLK-SKQEERESRGISVSDRHRKDRGKRRRVEEGSRS

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.9e-3945.33Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+    Q+D   DPV HLDAY  WMD +G ++A RCR F+ TL G AR WF ++ + SI SFK LARAFVTQF+G R R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE
           +SLRDY+ RF+ E L +EG  D V+L A +SG++DE L  S G+  P T+   ++RAQRY+SA E   SK+E    R     +R   D+ +  R E+
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE

Query:  GSRSKYPQPMVEAEQ-RPRSLESEQ
          RS    P  + E+  P ++  EQ
Subjt:  GSRSKYPQPMVEAEQ-RPRSLESEQ

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.5e-3645.32Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+     +D   +PV HLDAY  WMD +G + A RCR F+ TL G AR WF ++ + SI SFK LARAF+TQF+G R R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE
           +SL DY+ RF+ E L +EG  D V+L A +SG++DE L  S  +  P T+   ++RAQRY+SA E   SK+E    R    +D+ R+  G +    +
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE

Query:  GSR
        GSR
Subjt:  GSR

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166192.5e-3742.66Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+    +YD   DP+ HLD Y  W D +G  +A RCR F+ TLTG  R WF ++ ++SI SFKELARAFVTQF G  NR +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEER-------ESRGISVSDRH-----
           +SL+DY+ RF+ E L +EG  D V L   ISG++DE+L+ S G+    T+    +RAQ Y+S  EL+ SK++ +         R      RH     
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEER-------ESRGISVSDRH-----

Query:  RKDRGKRRRVEEGSRSKY
        R D G+ R V+   + K+
Subjt:  RKDRGKRRRVEEGSRSKY

A0A6J1D7D2 uncharacterized protein LOC1110183074.2e-3741.26Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M V+VP KFK+    Q+D   D V HLDAY  WMD +G ++A +CR F+ TL+G AR WF ++ + SI SFK LA+AFVTQF+G R+R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKR-----
           +SL DY+ RF+ E L +EG  + V+L A +S ++DE L  S G+  P T+   ++RAQ+Y+SA E   SK+E    +    SD++R+  G +     
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKR-----

Query:  -RRVEEGSRSKYPQPMVEAEQRP
          + +  +R  +P+ +    Q P
Subjt:  -RRVEEGSRSKYPQPMVEAEQRP

A0A6J1DWY0 uncharacterized protein LOC1110252939.0e-4045.33Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+    Q+D   DPV HLDAY  WMD +G ++A RCR F+ TL G AR WF ++ + SI SFK LARAFVTQF+G R R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE
           +SLRDY+ RF+ E L +EG  D V+L A +SG++DE L  S G+  P T+   ++RAQRY+SA E   SK+E    R     +R   D+ +  R E+
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE

Query:  GSRSKYPQPMVEAEQ-RPRSLESEQ
          RS    P  + E+  P ++  EQ
Subjt:  GSRSKYPQPMVEAEQ-RPRSLESEQ

A0A6J1DZ49 uncharacterized protein LOC1110248519.0e-4046.97Show/hide
Query:  KFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQGPRKSLR
        KFK+    +YD   DP+ HLDAY  W D +   +A RCR F+ TLTG AR WF ++ + SI SFKELA AFVTQF+G R + KP   LLT+KQ   +SL+
Subjt:  KFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQGPRKSLR

Query:  DYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLK-SKQEERESRGISVSDRHRKDRGKRRRVEEGSRS
        +Y+ RF+ E L +EG  D VAL A +SG++DERL+ S G+  P T++  ++RAQ+Y+SA EL+  S+  ERE    S     R+ RG++R      RS
Subjt:  DYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLK-SKQEERESRGISVSDRHRKDRGKRRRVEEGSRS

A0A6J1E1E7 uncharacterized protein LOC1110255487.2e-3745.32Show/hide
Query:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ
        M  +VP KFK+     +D   +PV HLDAY  WMD +G + A RCR F+ TL G AR WF ++ + SI SFK LARAF+TQF+G R R +P   LLT+KQ
Subjt:  MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQ

Query:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE
           +SL DY+ RF+ E L +EG  D V+L A +SG++DE L  S  +  P T+   ++RAQRY+SA E   SK+E    R    +D+ R+  G +    +
Subjt:  GPRKSLRDYIHRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEE

Query:  GSR
        GSR
Subjt:  GSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGGAGGTACCGCAGAAATTTAAGGTATCAAACTTCCCGCAGTACGATAGAAAGAAAGATCCAGTGCAGCACCTAGACGCATACCTTACCTGGATGGATTTTCA
CGGGGCAAACAAAGCGACTAGGTGTCGAGCTTTTGCATTGACATTGACAGGTTTGGCAAGACAGTGGTTTAGCAAGATACCGCAAAGATCAATCGGTTCGTTTAAAGAGT
TAGCACGGGCATTCGTTACTCAATTCTTAGGAGCTCGGAACCGACAGAAACCTCAGATCAACCTATTAACAGTAAAACAGGGGCCGAGGAAGAGTCTTAGAGATTATATC
CACAGGTTCAGCAACGAGGTATTGCATATGGAAGGTTATGACGATGGAGTTGCACTAACTGCTGTAATCTCAGGTTTGCAGGACGAGAGGTTGCTTAACTCAATTGGCGA
AATTCAACCACGAACGTACGTTGTATTAATGACCCGAGCACAAAGGTATATAAGCGCCGAAGAACTACTAAAGTCAAAACAAGAGGAGAGAGAGAGTCGGGGAATCTCCG
TATCTGATCGACACAGAAAGGACAGAGGAAAAAGACGCAGGGTTGAAGAAGGTAGCCGAAGCAAATATCCTCAGCCAATGGTCGAGGCCGAGCAGAGGCCAAGGAGCCTC
GAGTCTGAGCAGAGCCAAAGGCAAAGTTTGACAAGTATACCCCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGGAGGTACCGCAGAAATTTAAGGTATCAAACTTCCCGCAGTACGATAGAAAGAAAGATCCAGTGCAGCACCTAGACGCATACCTTACCTGGATGGATTTTCA
CGGGGCAAACAAAGCGACTAGGTGTCGAGCTTTTGCATTGACATTGACAGGTTTGGCAAGACAGTGGTTTAGCAAGATACCGCAAAGATCAATCGGTTCGTTTAAAGAGT
TAGCACGGGCATTCGTTACTCAATTCTTAGGAGCTCGGAACCGACAGAAACCTCAGATCAACCTATTAACAGTAAAACAGGGGCCGAGGAAGAGTCTTAGAGATTATATC
CACAGGTTCAGCAACGAGGTATTGCATATGGAAGGTTATGACGATGGAGTTGCACTAACTGCTGTAATCTCAGGTTTGCAGGACGAGAGGTTGCTTAACTCAATTGGCGA
AATTCAACCACGAACGTACGTTGTATTAATGACCCGAGCACAAAGGTATATAAGCGCCGAAGAACTACTAAAGTCAAAACAAGAGGAGAGAGAGAGTCGGGGAATCTCCG
TATCTGATCGACACAGAAAGGACAGAGGAAAAAGACGCAGGGTTGAAGAAGGTAGCCGAAGCAAATATCCTCAGCCAATGGTCGAGGCCGAGCAGAGGCCAAGGAGCCTC
GAGTCTGAGCAGAGCCAAAGGCAAAGTTTGACAAGTATACCCCACTAA
Protein sequenceShow/hide protein sequence
MGVEVPQKFKVSNFPQYDRKKDPVQHLDAYLTWMDFHGANKATRCRAFALTLTGLARQWFSKIPQRSIGSFKELARAFVTQFLGARNRQKPQINLLTVKQGPRKSLRDYI
HRFSNEVLHMEGYDDGVALTAVISGLQDERLLNSIGEIQPRTYVVLMTRAQRYISAEELLKSKQEERESRGISVSDRHRKDRGKRRRVEEGSRSKYPQPMVEAEQRPRSL
ESEQSQRQSLTSIPH