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Lag0021968 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021968
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpolypyrimidine tract-binding protein 3
Genome locationchr7:15039560..15044666
RNA-Seq ExpressionLag0021968
SyntenyLag0021968
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019328285.1 PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X5 [Aptenodytes forsteri]4.9e-1029.91Show/hide
Query:  VTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGVHEGESGD--YPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGE
        V +P G    P   G+G AG     S Y    +  G G+ G     +G   +P  +   P  +G G AGV  A  V +P G    P   G+G AG     
Subjt:  VTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGVHEGESGD--YPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGE

Query:  SGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHEGESG--DYPCRLLRSPNKMGTGLAGVHE
        S Y +  +  G G+ G   G +G  PC     P   G G+AG      +G       +     G G+ G H   +G   +P      P + G G AGV  
Subjt:  SGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHEGESG--DYPCRLLRSPNKMGTGLAGVHE

Query:  ANLVTTPAGYSDHPIKWGLGLAGV
        A  V +P G  D     G+G AGV
Subjt:  ANLVTTPAGYSDHPIKWGLGLAGV

XP_019328287.1 PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X7 [Aptenodytes forsteri]4.9e-1029.91Show/hide
Query:  VTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGVHEGESGD--YPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGE
        V +P G    P   G+G AG     S Y    +  G G+ G     +G   +P  +   P  +G G AGV  A  V +P G    P   G+G AG     
Subjt:  VTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGVHEGESGD--YPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGE

Query:  SGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHEGESG--DYPCRLLRSPNKMGTGLAGVHE
        S Y +  +  G G+ G   G +G  PC     P   G G+AG      +G       +     G G+ G H   +G   +P      P + G G AGV  
Subjt:  SGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHEGESG--DYPCRLLRSPNKMGTGLAGVHE

Query:  ANLVTTPAGYSDHPIKWGLGLAGV
        A  V +P G  D     G+G AGV
Subjt:  ANLVTTPAGYSDHPIKWGLGLAGV

XP_021864041.1 polypyrimidine tract-binding protein homolog 3 [Spinacia oleracea]2.1e-0533.33Show/hide
Query:  GDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGESGDYPCRLKTPSRSEDFKIQESIKASNSRSSVPALD-----LEELQVNY
        GD P R+L            V   + V +P G+ +  + +          ++  +   ++  SR+     + S++  N       LD     LEELQVNY
Subjt:  GDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGESGDYPCRLKTPSRSEDFKIQESIKASNSRSSVPALD-----LEELQVNY

Query:  NNKGSRDFTNPNLPSEPKGQSSQ
        NN+ +RDFTNPNLP+EPKG+SSQ
Subjt:  NNKGSRDFTNPNLPSEPKGQSSQ

XP_022932099.1 polypyrimidine tract-binding protein homolog 3 isoform X2 [Cucurbita moschata]6.1e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

XP_023525438.1 polypyrimidine tract-binding protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo]6.1e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

TrEMBL top hitse value%identityAlignment
A0A0K9RGL0 Uncharacterized protein1.0e-0533.33Show/hide
Query:  GDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGESGDYPCRLKTPSRSEDFKIQESIKASNSRSSVPALD-----LEELQVNY
        GD P R+L            V   + V +P G+ +  + +          ++  +   ++  SR+     + S++  N       LD     LEELQVNY
Subjt:  GDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGESGDYPCRLKTPSRSEDFKIQESIKASNSRSSVPALD-----LEELQVNY

Query:  NNKGSRDFTNPNLPSEPKGQSSQ
        NN+ +RDFTNPNLP+EPKG+SSQ
Subjt:  NNKGSRDFTNPNLPSEPKGQSSQ

A0A6J1EVP5 polypyrimidine tract-binding protein homolog 3 isoform X13.0e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

A0A6J1EW29 polypyrimidine tract-binding protein homolog 3 isoform X23.0e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

A0A6J1I765 polypyrimidine tract-binding protein homolog 3 isoform X23.0e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

A0A6J1I9W1 polypyrimidine tract-binding protein homolog 3 isoform X13.0e-0584.38Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ
        +L+ELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQ

SwissProt top hitse value%identityAlignment
Q6ICX4 Polypyrimidine tract-binding protein homolog 39.8e-0677.42Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS
        +LEELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS

Arabidopsis top hitse value%identityAlignment
AT1G43190.1 polypyrimidine tract-binding protein 37.0e-0777.42Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS
        +LEELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS

AT1G43190.2 polypyrimidine tract-binding protein 37.0e-0777.42Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS
        +LEELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS

AT1G43190.3 polypyrimidine tract-binding protein 37.0e-0777.42Show/hide
Query:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS
        +LEELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  DLEELQVNYNNKGSRDFTNPNLPSEPKGQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCC
AATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGC
ATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCCA
ATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCA
TCCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCA
GGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTG
GGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGATTGAAGACTCCTTCAAGATCGGAAGACTTCAAGATCCAAGAATCCATTAAAGCTTCAAACTC
GAGATCAAGCGTTCCAGCCCTCGATCTTGAGGAGTTACAAGTGAACTACAATAACAAGGGTTCAAGGGATTTCACAAATCCTAACCTGCCTTCTGAACCAAAAGGTCAGT
CATCACAATTACATCTTAACTTCATTAGTTATGATTTGGATTACTGTGTTATGCAAAATCTGACTCGCTTGTATTTGGAGATTGTGGTGTTGCCCAGGTGTTATGAGGGT
TGTAGTTGGGTGTTTCTAGCTATATTGAAGTGCATTTCTCTTGTTTGGCAGATGATTCGACTCAATCATAATATGGAAGGACACATTTGCATTTGGAGGCCGCCACGAGC
TTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCC
AATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGC
ATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTTACTCAGATCACCCA
ATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCA
TCCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCA
GGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTG
GGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGATTGAAGACTCCTTCAAGATCGGAAGACTTCAAGATCCAAGAATCCATTAAAGCTTCAAACTC
GAGATCAAGCGTTCCAGCCCTCGATCTTGAGGAGTTACAAGTGAACTACAATAACAAGGGTTCAAGGGATTTCACAAATCCTAACCTGCCTTCTGAACCAAAAGGTCAGT
CATCACAATTACATCTTAACTTCATTAGTTATGATTTGGATTACTGTGTTATGCAAAATCTGACTCGCTTGTATTTGGAGATTGTGGTGTTGCCCAGGTGTTATGAGGGT
TGTAGTTGGGTGTTTCTAGCTATATTGAAGTGCATTTCTCTTGTTTGGCAGATGATTCGACTCAATCATAATATGGAAGGACACATTTGCATTTGGAGGCCGCCACGAGC
TTGTTAG
Protein sequenceShow/hide protein sequence
MKANLVTTPAGYSDHPIKWGLGLAGVHEGESGYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHEGESGYSDHP
IKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHEANLVTTPAGYSDHPIKWGL
GLAGVHEGESGDYPCRLKTPSRSEDFKIQESIKASNSRSSVPALDLEELQVNYNNKGSRDFTNPNLPSEPKGQSSQLHLNFISYDLDYCVMQNLTRLYLEIVVLPRCYEG
CSWVFLAILKCISLVWQMIRLNHNMEGHICIWRPPRAC