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Lag0021969 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021969
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr7:15061252..15061650
RNA-Seq ExpressionLag0021969
SyntenyLag0021969
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]1.9e-0942.39Show/hide
Query:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        ++ ST+ S+S   +     S P P  +  +PNP           P++ QP AVKL+D+N+++WK QL+N+V+ANGL  FLDG    PPRFLD
Subjt:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]1.1e-0943.48Show/hide
Query:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        ++ ST+ SSS   +     S P P  +   PNP           P++ QP AVKL+D+N+++WK QL+N+V+ANGL  FLDG    PPRFLD
Subjt:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.8e-0843.37Show/hide
Query:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        S + S    ++ + Q   P P+   FSPN     YP+L QP  +KL++ N  LWKNQL+NV++ANGL  F++G  P P +FLD
Subjt:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]3.6e-0843.37Show/hide
Query:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        S + S    ++ + Q   P P+   FSPN     YP+L QP  +KL++ N  LWKNQL+NV++ANGL  F++G  P P +FLD
Subjt:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]6.8e-1564.29Show/hide
Query:  QFSAPFP-----LQNFFSPNPYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        QF  P P       N FS NP+PTLPQP  VKLNDNNFLLWKNQL+N V+ANGL  +LDG I  PP+FLD
Subjt:  QFSAPFP-----LQNFFSPNPYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE11.3e-0843.37Show/hide
Query:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        S + S    ++ + Q   P P+   FSPN     YP+L QP  +KL++ N  LWKNQL+NV++ANGL  F++G  P P +FLD
Subjt:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

A0A438KNU0 Uncharacterized protein1.8e-0843.37Show/hide
Query:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        S + S    ++ + Q   P P+   FSPN     YP+L QP  +KL++ N  LWKNQL+NV++ANGL  F++G  P P +FLD
Subjt:  STSVSSSKYISTSDQFSAPFPLQNFFSPN----PYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

A0A6J1DQX7 uncharacterized protein LOC1110223153.3e-1564.29Show/hide
Query:  QFSAPFP-----LQNFFSPNPYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        QF  P P       N FS NP+PTLPQP  VKLNDNNFLLWKNQL+N V+ANGL  +LDG I  PP+FLD
Subjt:  QFSAPFP-----LQNFFSPNPYPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

A0A7J0EGI5 Uncharacterized protein9.3e-1042.39Show/hide
Query:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        ++ ST+ S+S   +     S P P  +  +PNP           P++ QP AVKL+D+N+++WK QL+N+V+ANGL  FLDG    PPRFLD
Subjt:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

A0A7J0GPN0 UBX domain-containing protein5.5e-1043.48Show/hide
Query:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD
        ++ ST+ SSS   +     S P P  +   PNP           P++ QP AVKL+D+N+++WK QL+N+V+ANGL  FLDG    PPRFLD
Subjt:  LSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNP----------YPTLPQPFAVKLNDNNFLLWKNQLINVVLANGLSSFLDGMIPTPPRFLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAGAAAAATCCTGTTGTCCCTCCCCTTCAAACGACAAATCAGTCGATCCTTCCCTTCAATCCAAACACTTATCCCCTCCTGGCTTTTATCCGAATACCTATCCTC
AAACTCTGCCTCAGTATCTGAACTTCATGCCCCAATAGTCCTTTCTCCCTCGACCTCGGTTTCCAGCTCCAAATACATTTCCACCTCCGACCAATTTTCAGCTCCCTTCC
CTCTGCAGAATTTCTTTTCCCCCAACCCTTATCCCACATTGCCTCAACCATTTGCGGTCAAACTTAATGACAACAACTTCTTGTTGTGGAAGAATCAGCTTATCAATGTG
GTTCTTGCGAACGGTCTCTCTAGTTTTCTCGATGGGATGATCCCTACTCCTCCTCGGTTTCTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAGAAAAATCCTGTTGTCCCTCCCCTTCAAACGACAAATCAGTCGATCCTTCCCTTCAATCCAAACACTTATCCCCTCCTGGCTTTTATCCGAATACCTATCCTC
AAACTCTGCCTCAGTATCTGAACTTCATGCCCCAATAGTCCTTTCTCCCTCGACCTCGGTTTCCAGCTCCAAATACATTTCCACCTCCGACCAATTTTCAGCTCCCTTCC
CTCTGCAGAATTTCTTTTCCCCCAACCCTTATCCCACATTGCCTCAACCATTTGCGGTCAAACTTAATGACAACAACTTCTTGTTGTGGAAGAATCAGCTTATCAATGTG
GTTCTTGCGAACGGTCTCTCTAGTTTTCTCGATGGGATGATCCCTACTCCTCCTCGGTTTCTTGATTAG
Protein sequenceShow/hide protein sequence
MSRKILLSLPFKRQISRSFPSIQTLIPSWLLSEYLSSNSASVSELHAPIVLSPSTSVSSSKYISTSDQFSAPFPLQNFFSPNPYPTLPQPFAVKLNDNNFLLWKNQLINV
VLANGLSSFLDGMIPTPPRFLD