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Lag0021979 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0021979
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr7:15312786..15316994
RNA-Seq ExpressionLag0021979
SyntenyLag0021979
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059710.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2261Show/hide
Query:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        +WLSLEKRYSSNTR N+L+LR ALY IKK  FES+++YT RIK L+DKL  ASVS+++EE+LVHTLNG P    AFRT IRTRSG+  L+      +S++
Subjt:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-2850.6Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-------------------TEDNTST-------GTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF
        AHSLFGHIDD+LP P K +P+ST GTN+                     D  S+        + +++ +WLSLEKRYSSNTRSN+L+LR ALY I K   
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-------------------TEDNTST-------GTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF

Query:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        ES+++YT RIK L+DKLA ASVS+++EE+LVHTLNGLP    AFRTSIRTRSG+  L+      +S++
Subjt:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2149.32Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNTTEDNTSTGTDTTEDMWLSL-EKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSID
        AHSLFGHIDD+LP P K +P+ST GTN+  +       + +   ++L     SS+  ++V+    +LY  KK   ES+++YT RIK L+DKL  AS+S++
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNTTEDNTSTGTDTTEDMWLSL-EKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSID

Query:  EEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKKNPF
        +EE+LVHTLNGLP    AF TSIRTRS + PLKNF  FS  KK P+
Subjt:  EEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKKNPF

TYK26148.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2261Show/hide
Query:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        +WLSLEKRYSSNTR N+L+LR ALY IKK  FES+++YT RIK L+DKL  ASVS+++EE+LVHTLNG P    AFRT IRTRSG+  L+      +S++
Subjt:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

XP_016902970.1 PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo]3.8e-2647.09Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF
        A+S FGHIDD+LP P K +P ST GTN+                 T  NT+          G+ +++ +WLSLEKRYSSNT+SN+L+L  ALY +KK   
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF

Query:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT
        ES+++YT RIK  +DKLA AS+S++ E +LVHTLNGLP    AFRTSIRTRSG+  L+      +S++   T
Subjt:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT

TrEMBL top hitse value%identityAlignment
A0A1S4E4S1 uncharacterized protein LOC1079919681.8e-2647.09Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF
        A+S FGHIDD+LP P K +P ST GTN+                 T  NT+          G+ +++ +WLSLEKRYSSNT+SN+L+L  ALY +KK   
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF

Query:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT
        ES+++YT RIK  +DKLA AS+S++ E +LVHTLNGLP    AFRTSIRTRSG+  L+      +S++   T
Subjt:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT

A0A5A7T8B0 Retrotransposon protein1.8e-2647.09Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF
        A+S FGHIDD+LP P K +P ST GTN+                 T  NT+          G+ +++ +WLSLEKRYSSNT+SN+L+L  ALY +KK   
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-----------------TEDNTS---------TGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF

Query:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT
        ES+++YT RIK  +DKLA AS+S++ E +LVHTLNGLP    AFRTSIRTRSG+  L+      +S++   T
Subjt:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLPT---AFRTSIRTRSGSYPLKNFMHFSLSKKNPFT

A0A5A7UX39 Retrotransposon protein5.6e-2361Show/hide
Query:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        +WLSLEKRYSSNTR N+L+LR ALY IKK  FES+++YT RIK L+DKL  ASVS+++EE+LVHTLNG P    AFRT IRTRSG+  L+      +S++
Subjt:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

A0A5A7UZE5 Putative mitochondrial protein8.8e-2950.6Show/hide
Query:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-------------------TEDNTST-------GTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF
        AHSLFGHIDD+LP P K +P+ST GTN+                     D  S+        + +++ +WLSLEKRYSSNTRSN+L+LR ALY I K   
Subjt:  AHSLFGHIDDSLPKPNKFIPTST-GTNT-------------------TEDNTST-------GTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSF

Query:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        ES+++YT RIK L+DKLA ASVS+++EE+LVHTLNGLP    AFRTSIRTRSG+  L+      +S++
Subjt:  ESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

A0A5D3DRG9 Retrotransposon protein5.6e-2361Show/hide
Query:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK
        +WLSLEKRYSSNTR N+L+LR ALY IKK  FES+++YT RIK L+DKL  ASVS+++EE+LVHTLNG P    AFRT IRTRSG+  L+      +S++
Subjt:  MWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYTCRIKELLDKLATASVSIDEEEVLVHTLNGLP---TAFRTSIRTRSGSYPLKNFMHFSLSKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTGAAGTTTGGAAAATTTTTCTCTTTGAAAGAAGAAGATGTGAGCGCTTCTTGTTCAACAAAAGGTGTTAAAAGCACTGATCAGAAGATTGTGGCTACGACAAT
GGAAGCTAATAAACTTGTTGAAATCAATGAGATAACCTTTCGTTCATCATCCTCTATCTTGCCGACAATGTGCTACGTCAAGTTCATGAAGTTATATTGCCTTATAGGCA
GAAAGCAAAAGTGTCTTGACGCTATGCAATTAGACCCTCAACGTCGCAAATCCGAAGGGACAATGTCGAGATGCTACCCTAAAGCGTCTCGGTGCTGTAGCAAGCCTGGG
AAGCGAAATTTCCTTGCACGCGTGTTTTTAGTGTATATCTGTTTGGAGCCTCTCGATGCTTCCGAGAGCATCTTGACGCTCTCGGTTGGGGCCCATTCTCTATTTGGGCA
TATTGATGATTCTCTCCCCAAACCGAACAAGTTCATTCCTACATCAACAGGTACAAACACAACCGAGGACAATACATCAACAGGTACAGACACAACCGAGGATATGTGGC
TATCTTTAGAAAAACGCTACTCTTCAAATACAAGGTCTAATGTTCTTGAATTACGTCCAGCTTTATACAAAATTAAGAAACTTTCATTTGAATCCGTGGAGAAATATACT
TGTCGAATTAAAGAACTCCTTGACAAGCTTGCTACAGCTTCTGTTTCCATTGATGAAGAAGAAGTATTAGTTCATACCTTGAATGGACTACCAACCGCCTTTCGGACATC
CATACGAACACGTAGTGGTTCTTATCCCTTGAAGAACTTCATGCACTTCTCACTGTCGAAGAAAAATCCATTCACGCTGTTTCTGTTCCTTAGATGCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTGAAGTTTGGAAAATTTTTCTCTTTGAAAGAAGAAGATGTGAGCGCTTCTTGTTCAACAAAAGGTGTTAAAAGCACTGATCAGAAGATTGTGGCTACGACAAT
GGAAGCTAATAAACTTGTTGAAATCAATGAGATAACCTTTCGTTCATCATCCTCTATCTTGCCGACAATGTGCTACGTCAAGTTCATGAAGTTATATTGCCTTATAGGCA
GAAAGCAAAAGTGTCTTGACGCTATGCAATTAGACCCTCAACGTCGCAAATCCGAAGGGACAATGTCGAGATGCTACCCTAAAGCGTCTCGGTGCTGTAGCAAGCCTGGG
AAGCGAAATTTCCTTGCACGCGTGTTTTTAGTGTATATCTGTTTGGAGCCTCTCGATGCTTCCGAGAGCATCTTGACGCTCTCGGTTGGGGCCCATTCTCTATTTGGGCA
TATTGATGATTCTCTCCCCAAACCGAACAAGTTCATTCCTACATCAACAGGTACAAACACAACCGAGGACAATACATCAACAGGTACAGACACAACCGAGGATATGTGGC
TATCTTTAGAAAAACGCTACTCTTCAAATACAAGGTCTAATGTTCTTGAATTACGTCCAGCTTTATACAAAATTAAGAAACTTTCATTTGAATCCGTGGAGAAATATACT
TGTCGAATTAAAGAACTCCTTGACAAGCTTGCTACAGCTTCTGTTTCCATTGATGAAGAAGAAGTATTAGTTCATACCTTGAATGGACTACCAACCGCCTTTCGGACATC
CATACGAACACGTAGTGGTTCTTATCCCTTGAAGAACTTCATGCACTTCTCACTGTCGAAGAAAAATCCATTCACGCTGTTTCTGTTCCTTAGATGCCATTGA
Protein sequenceShow/hide protein sequence
MAVKFGKFFSLKEEDVSASCSTKGVKSTDQKIVATTMEANKLVEINEITFRSSSSILPTMCYVKFMKLYCLIGRKQKCLDAMQLDPQRRKSEGTMSRCYPKASRCCSKPG
KRNFLARVFLVYICLEPLDASESILTLSVGAHSLFGHIDDSLPKPNKFIPTSTGTNTTEDNTSTGTDTTEDMWLSLEKRYSSNTRSNVLELRPALYKIKKLSFESVEKYT
CRIKELLDKLATASVSIDEEEVLVHTLNGLPTAFRTSIRTRSGSYPLKNFMHFSLSKKNPFTLFLFLRCH