| GenBank top hits | e value | %identity | Alignment |
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| KAA3480785.1 reverse transcriptase [Gossypium australe] | 9.0e-49 | 41.92 | Show/hide |
Query: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSGLDKLGVTRTLSGSIPRLPIEDGRTRLRVFIT------R
++ ++K+GG R ++ F+ + C L + + G+ TW R + +++ERLDR G+ L TR + I+ R + +T
Subjt: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSGLDKLGVTRTLSGSIPRLPIEDGRTRLRVFIT------R
Query: QHSREIEAVIEAIDCKIS-----EEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK
+ R+ E + E ID KI EE L ++F+++EI ALK+M TKAP DG A++YQ+ W IG+ V + CL LNKG D+S INKT IVLIPK
Subjt: QHSREIEAVIEAIDCKIS-----EEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK
Query: CKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
P ++ + RPISLCNVIYK+I KA+A RL+ VL + I Q+ F+PGRLI DNV+L +E + + NK+ GK GL+A+KLDMSKAYDRV+
Subjt: CKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| KAA3485636.1 reverse transcriptase [Gossypium australe] | 4.5e-48 | 39.19 | Show/hide |
Query: KQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVS----GLDKLG----VTRTLSGSIPRLPIEDGR-----TRL----
K+ G R ++ F++ ++ C L + F G FTW R K +++ERLDR + L LG T + I +L +DG+ T L
Subjt: KQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVS----GLDKLG----VTRTLSGSIPRLPIEDGR-----TRL----
Query: RVFITRQHSREIEA----VIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYI
++F + S + A ++E +D IS E L+S F+ DEI+ ALK MG KAP DG AL++Q++W +GK V+ CL VLN G+++ N T I
Subjt: RVFITRQHSREIEA----VIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYI
Query: VLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
+LIPK P + RPISLC V+YK++TK +A R+++V+ I Q+ F+PGRLI+DN++L +E + KR GK+G + +KLDMSKAYDRVE
Subjt: VLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| XP_024044510.1 uncharacterized protein LOC112100177 [Citrus clementina] | 4.5e-48 | 34.33 | Show/hide |
Query: NDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFV-----SGLDKLGVTRTLSGSIPRLPI----------EDGRTRL
N+K GG + N ++ F+ A+ C L + G FTW ++E+LDRF S + + S S +PI ++G
Subjt: NDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFV-----SGLDKLGVTRTLSGSIPRLPI----------EDGRTRL
Query: RVFITRQHSR-------------------------------------------EIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDG
+ F ++ +R ++ A +EA+ K+S E LD F+++EI +AL M TKAP DG
Subjt: RVFITRQHSR-------------------------------------------EIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDG
Query: AHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNV
A ++Q+ W + + V+S CL +LN+G +++ +N T+I L+PK KP+ + E RPI+LCNVIY+I+ K +A RLK VL ++IS NQ+ F+P RLITDN+
Subjt: AHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNV
Query: VLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
++G+EC+ I R + GLIAMKLD+SKAYDRVE
Subjt: VLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| XP_030939512.1 uncharacterized protein LOC115964316 [Quercus lobata] | 3.4e-48 | 52.11 | Show/hide |
Query: FITRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKC
+++ + ++E + A+ K++ E L S+FS DE+ AL MG TKAP PDG +AL+YQRFW +G V+ LD LN G + DIN TYIVLIPK
Subjt: FITRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKC
Query: KKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
K P+ M + RPISLCNVIYKII+K LA RLK+VL +IS Q+ F+PGRLITDNV++ +E + ++ ++ GK+G +A+KLD+SKAYDRVE
Subjt: KKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| XP_039834390.1 uncharacterized protein LOC120695147 [Panicum virgatum] | 2.8e-50 | 39.87 | Show/hide |
Query: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDS-VKERLDRFFVSGL--DKLGVTRTLSGSIPR-------------------
+F +K+GG RA F++A+ C L + FVGD FTW S V+ERLDR + + + R ++G PR
Subjt: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDS-VKERLDRFFVSGL--DKLGVTRTLSGSIPR-------------------
Query: --------------LPIEDGRTRLRVFITRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVIS
L E+ R++ S +IE V++ + KI+ + L + FS DE+ ALKDMG KAP DG ++Y++FW +G+ V
Subjt: --------------LPIEDGRTRLRVFITRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVIS
Query: VCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEG
L VLN N T IVL+PK K P+ +K++RPISLCNV+YK+I+K LA RLK VL E+ISP+Q+ F+PGRLITDNV+L +E +N +R GK G
Subjt: VCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEG
Query: LIAMKLDMSKAYDRVE
+ A+KLDMSKAYDRVE
Subjt: LIAMKLDMSKAYDRVE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3MPI1 Ribonuclease H | 4.5e-46 | 50 | Show/hide |
Query: TRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKK
T + IEA E + K+SEE W ++DFS +EI +A+ M KAP PDG AL+YQ++W +G V ++ L +LN+ D DINKT++VLIPK K
Subjt: TRQHSREIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKK
Query: PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
P K+ RPISLCNV+ KI+TK +A RLK L +VI Q+ F+ GRLITDN ++ EC + KR GK+G++A+KLDMSKAYDR+E
Subjt: PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| A0A5B6WI49 Reverse transcriptase | 4.4e-49 | 41.92 | Show/hide |
Query: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSGLDKLGVTRTLSGSIPRLPIEDGRTRLRVFIT------R
++ ++K+GG R ++ F+ + C L + + G+ TW R + +++ERLDR G+ L TR + I+ R + +T
Subjt: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSGLDKLGVTRTLSGSIPRLPIEDGRTRLRVFIT------R
Query: QHSREIEAVIEAIDCKIS-----EEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK
+ R+ E + E ID KI EE L ++F+++EI ALK+M TKAP DG A++YQ+ W IG+ V + CL LNKG D+S INKT IVLIPK
Subjt: QHSREIEAVIEAIDCKIS-----EEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK
Query: CKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
P ++ + RPISLCNVIYK+I KA+A RL+ VL + I Q+ F+PGRLI DNV+L +E + + NK+ GK GL+A+KLDMSKAYDRV+
Subjt: CKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| A0A5B6WW96 Reverse transcriptase | 2.2e-48 | 39.19 | Show/hide |
Query: KQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVS----GLDKLG----VTRTLSGSIPRLPIEDGR-----TRL----
K+ G R ++ F++ ++ C L + F G FTW R K +++ERLDR + L LG T + I +L +DG+ T L
Subjt: KQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVS----GLDKLG----VTRTLSGSIPRLPIEDGR-----TRL----
Query: RVFITRQHSREIEA----VIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYI
++F + S + A ++E +D IS E L+S F+ DEI+ ALK MG KAP DG AL++Q++W +GK V+ CL VLN G+++ N T I
Subjt: RVFITRQHSREIEA----VIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYI
Query: VLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
+LIPK P + RPISLC V+YK++TK +A R+++V+ I Q+ F+PGRLI+DN++L +E + KR GK+G + +KLDMSKAYDRVE
Subjt: VLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| A0A5B6X7R9 Reverse transcriptase | 1.4e-47 | 35.91 | Show/hide |
Query: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDR---------FF-----------------------VSG--LDKL
+++++K GG R +++F++ + C LE + + G FTW R + +++ERLDR FF ++G L+KL
Subjt: MFTNDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDR---------FF-----------------------VSG--LDKL
Query: GVTRTLSGSIPRL--PIEDGRTRLRVFITRQHS-------REIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGE
L G++ I+ G+ L+ +T++ E +++ I+ +IS + L S F+E+ +V ALK+MG TKAP PDG A+++Q++
Subjt: GVTRTLSGSIPRL--PIEDGRTRLRVFITRQHS-------REIEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGE
Query: IGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINN
+GK V S CL +LN G++ +N T IVLIP + P ++ RPISLC+V+YKI+ KA+A RL+ +++ I Q+ FIPGRLI DN++L FE +
Subjt: IGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINN
Query: KRSGKEGLIAMKLDMSKAYDRVE
KR GK+G +A+KLDMSKAYDR E
Subjt: KRSGKEGLIAMKLDMSKAYDRVE
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| A0A803QG02 Uncharacterized protein | 1.8e-47 | 37.67 | Show/hide |
Query: NDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSG-------------LDKLGVTRTLSGSIPRLPIED-----GR
+DK+GG +R ++ F+ I C + ++F+GDKFTW VKERLDR F +G LD LP D R
Subjt: NDKQGGAIRASNHIDAFKDAISLCGLELVNFVGDKFTWFRSPKRKDSVKERLDRFFVSG-------------LDKLGVTRTLSGSIPRLPIED-----GR
Query: TRLRVFITRQHSRE-----IEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDIN
+ +F T S + ++EAI+ I+E+ L DF+ ++ +ALK M K+P DG A+++Q+ W +G V + L +LN+G DM DIN
Subjt: TRLRVFITRQHSRE-----IEAVIEAIDCKISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDIN
Query: KTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
I LI K +P+ + + RPISLC+V+Y +++KA+ R K L IS NQ+ F+PGRLITDNV+L FE + + NK+ G++ A+KLDMSKA+DRVE
Subjt: KTYIVLIPKCKKPKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| SwissProt top hits | e value | %identity | Alignment |
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| O00370 LINE-1 retrotransposable element ORF2 protein | 3.0e-15 | 29.65 | Show/hide |
Query: KISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKE-MRPISLCNVI
++++E+ L+ + EIV + + + K+P PDG A +YQR+ E+ +++ + + +G + + I+LIPK + KE RPISL N+
Subjt: KISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKE-MRPISLCNVI
Query: YKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
KI+ K LA R+++ +K++I +Q FIPG N+ I IN R+ + + + +D KA+D+++
Subjt: YKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| P08548 LINE-1 reverse transcriptase homolog | 2.3e-15 | 29.26 | Show/hide |
Query: QHSREIEAVIEAIDC-KISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK-CKK
++ +EI+ +EA ++S+++ L+ S EI ++++ K+P PDG + +YQ F E+ ++++ ++ +G + + I LIPK K
Subjt: QHSREIEAVIEAIDC-KISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPK-CKK
Query: PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
P + RPISL N+ KI+ K L R+++ +K++I +Q FIPG N+ I I NK K+ +I + +D KA+D ++
Subjt: PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| P11369 LINE-1 retrotransposable element ORF2 protein | 2.1e-16 | 28.69 | Show/hide |
Query: TWFRSPKRKDSVKERLDRFFVSGLDKLGVT--RTLSGSIPRLPIEDGRTRLRVFITRQHSREIEAVIEA---ID----CKISEEKAVWLDSDFSEDEIVK
+WF ++ + + + L R DK+ + R G I P E+ + +R F R +S ++E + E +D K+++++ L+S S EI
Subjt: TWFRSPKRKDSVKERLDRFFVSGLDKLGVT--RTLSGSIPRLPIEDGRTRLRVFITRQHSREIEAVIEA---ID----CKISEEKAVWLDSDFSEDEIVK
Query: ALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKK-PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVIS
+ + + K+P PDG A +YQ F ++ + + + +G + + I LIPK +K P ++ RPISL N+ KI+ K LA R++E +K +I
Subjt: ALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKK-PKHMKEMRPISLCNVIYKIITKALAIRLKEVLKEVIS
Query: PNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
P+Q FIPG N+ I IN + +I+ LD KA+D+++
Subjt: PNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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| P14381 Transposon TX1 uncharacterized 149 kDa protein | 1.8e-20 | 35.88 | Show/hide |
Query: ISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYK
+SE + L++ + DE+ +AL+ M K+P DG ++Q FW +G V + KGE + + L+PK + +K RP+SL + YK
Subjt: ISEEKAVWLDSDFSEDEIVKALKDMGSTKAPSPDGAHALYYQRFWGEIGKYVISVCLDVLNKGEDMSDINKTYIVLIPKCKKPKHMKEMRPISLCNVIYK
Query: IITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
I+ KA+++RLK VL EVI P+Q+ +PGR I DNV L + + +R+G L + LD KA+DRV+
Subjt: IITKALAIRLKEVLKEVISPNQATFIPGRLITDNVVLGFECIPAINNKRSGKEGLIAMKLDMSKAYDRVE
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