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Lag0022001 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022001
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA polymerase epsilon catalytic subunit
Genome locationchr7:15705583..15706983
RNA-Seq ExpressionLag0022001
SyntenyLag0022001
Gene Ontology termsGO:0000278 - mitotic cell cycle (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0006272 - leading strand elongation (biological process)
GO:0006287 - base-excision repair, gap-filling (biological process)
GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process)
GO:0045004 - DNA replication proofreading (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0008310 - single-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function)
GO:0000166 - nucleotide binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006133 - DNA-directed DNA polymerase, family B, exonuclease domain
IPR012337 - Ribonuclease H-like superfamily
IPR029703 - DNA polymerase epsilon catalytic subunit
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5561539.1 hypothetical protein DKX38_006496 [Salix brachista]9.8e-1791.3Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

KAF9684575.1 hypothetical protein SADUNF_Sadunf04G0132300 [Salix dunnii]9.8e-1791.3Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

KAG5248027.1 DNA-directed DNA polymerase epsilon catalytic family protein [Salix suchowensis]9.8e-1791.3Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

XP_022153061.1 DNA polymerase epsilon catalytic subunit A-like isoform X1 [Momordica charantia]4.4e-1793.48Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

XP_022153062.1 DNA polymerase epsilon catalytic subunit A-like isoform X2 [Momordica charantia]4.4e-1793.48Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

TrEMBL top hitse value%identityAlignment
A0A5N5N2H6 DNA polymerase epsilon catalytic subunit4.7e-1791.3Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

A0A6J1DHX7 DNA polymerase epsilon catalytic subunit2.1e-1793.48Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

A0A6J1DJK0 DNA polymerase epsilon catalytic subunit2.1e-1793.48Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL KLWFAHMREVKPGIYVTYNGDYFDWPFLESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

A0A6J1H1A3 DNA polymerase epsilon catalytic subunit1.1e-1689.13Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL K WFAHMREVKPGIYVTYNGDYFDWPF+ESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

A0A6J1K6J2 DNA polymerase epsilon catalytic subunit1.1e-1689.13Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        +LEL K WFAHMREVKPGIYVTYNGDYFDWPF+ESRA YHGFKMSD
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

SwissProt top hitse value%identityAlignment
F4HW04 DNA polymerase epsilon catalytic subunit A1.1e-1365.22Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL + WF HM+E+KPGIYVTYNGD+FDWPF+E RA++HG KM++
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

F4IFN6 DNA polymerase epsilon catalytic subunit B3.6e-1465.22Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL + WF+HM+E+KPGIYVTYNGD+FDWPF+E RA++HG KM++
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

Q07864 DNA polymerase epsilon catalytic subunit A2.1e-0956.82Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKM
        +  L + WF H++E KP I VTYNGD+FDWPF+E+RA  HG  M
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKM

Q6CUS7 DNA polymerase epsilon catalytic subunit A3.9e-0847.83Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++ L + +F H+R+V+P +  T+NGD+FDWPF+E+RA +HG  M D
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

Q9WVF7 DNA polymerase epsilon catalytic subunit A1.2e-0956.82Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKM
        ++ L + WF H++E KP I VTYNGD+FDWPF+E+RA  HG  M
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKM

Arabidopsis top hitse value%identityAlignment
AT1G08260.1 DNA polymerase epsilon catalytic subunit7.5e-1565.22Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL + WF HM+E+KPGIYVTYNGD+FDWPF+E RA++HG KM++
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD

AT2G27120.1 DNA polymerase epsilon catalytic subunit2.6e-1565.22Show/hide
Query:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD
        ++EL + WF+HM+E+KPGIYVTYNGD+FDWPF+E RA++HG KM++
Subjt:  QLELPKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGFKMSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGGTATTTTAGTAGAAACAAAATTAACTACGAACGGTCCTATTGCTTCCGCTGTAACGGAATTGGGGAATTCCAATCCTTCACCACCCTCGTCTTTTTCGCCCC
TGCGCACCAAATCTCCCGCACCATCGGTTCTCCTCCGTCGCCGTTGTCATTTATCTCGCGTCGCCGTCGTTGTTTTGCTCGTGCTTCCGTCGTCGTTCCACTCTGTAGTC
ATCGTCTTTTCTCGCTTCAACAGTTAGAGCTTCCCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTACAATGGCGACTATTTTGACTGG
CCATTCCTTGAAAGTAGAGCAACGTATCATGGATTTAAAATGAGTGATGCAAAACTTGAGCAATCAGAAGCAAAGACTATCCAGGTGGAATCAATGGTTGAGGAAGAGAG
GAGTGCAAGACTTGAAACGAAAGCTGAGCTAGAAAACTTGAGAGGAATGATCCAACAATTCATGTCATCACAAGGAGGAGAAACATCGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTGGTATTTTAGTAGAAACAAAATTAACTACGAACGGTCCTATTGCTTCCGCTGTAACGGAATTGGGGAATTCCAATCCTTCACCACCCTCGTCTTTTTCGCCCC
TGCGCACCAAATCTCCCGCACCATCGGTTCTCCTCCGTCGCCGTTGTCATTTATCTCGCGTCGCCGTCGTTGTTTTGCTCGTGCTTCCGTCGTCGTTCCACTCTGTAGTC
ATCGTCTTTTCTCGCTTCAACAGTTAGAGCTTCCCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTACAATGGCGACTATTTTGACTGG
CCATTCCTTGAAAGTAGAGCAACGTATCATGGATTTAAAATGAGTGATGCAAAACTTGAGCAATCAGAAGCAAAGACTATCCAGGTGGAATCAATGGTTGAGGAAGAGAG
GAGTGCAAGACTTGAAACGAAAGCTGAGCTAGAAAACTTGAGAGGAATGATCCAACAATTCATGTCATCACAAGGAGGAGAAACATCGAAATAG
Protein sequenceShow/hide protein sequence
MHWYFSRNKINYERSYCFRCNGIGEFQSFTTLVFFAPAHQISRTIGSPPSPLSFISRRRRCFARASVVVPLCSHRLFSLQQLELPKLWFAHMREVKPGIYVTYNGDYFDW
PFLESRATYHGFKMSDAKLEQSEAKTIQVESMVEEERSARLETKAELENLRGMIQQFMSSQGGETSK