; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022023 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022023
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr7:16060905..16061843
RNA-Seq ExpressionLag0022023
SyntenyLag0022023
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]2.7e-5649.1Show/hide
Query:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAK
        N I + +DR +AIR YA P+F  LNPGI+ P + AP FELKP+MFQML T+ QFSG+P EDPH H++ F                          R  A+
Subjt:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAK

Query:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK
        +WL++  P+S+T WNDLAEKFL K+FP  +NAK+R+EI+ F+Q  +E    AW+RF+ L+RKCPHHG+  CI +E FY+GL+ AS+ +++AS NG+ L K
Subjt:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK

Query:  STNEAHAILDTIATNNRHWGET
        S NEA  IL+TIA+NN  W  T
Subjt:  STNEAHAILDTIATNNRHWGET

XP_017216983.1 PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus]3.0e-5542.53Show/hide
Query:  MNKGYPLLDI-DPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIR
        M++ +P++ + DP IERTF RRRK QR+ K+ Q  +                               G   N G I  VP         +I +D+++AIR
Subjt:  MNKGYPLLDI-DPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIR

Query:  NYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AKAWLDSFSPNSITYW
         YA P F+ LN GI+ P + A  FELKP+MFQML T+ QFSG+P EDPH H++LF        F+GV                 A+ WL+S    S+T W
Subjt:  NYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AKAWLDSFSPNSITYW

Query:  NDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIAT
        NDL EKFL K+FP N NAK R EI  F+Q  +E L  AW+RF+ L+RKCPHHG+  CI +E FY+GL+  +K +V+AS NG+ L KS N+A+ IL+TIAT
Subjt:  NDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIAT

Query:  NNRHWGET
        NN  W  +
Subjt:  NNRHWGET

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]1.6e-5642.86Show/hide
Query:  MNKGYPLL-DIDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIR
        M+K +P++   DPEIERTF RRRK QR+ K+ Q  ++                                  N G IP VP         +I +D+++AIR
Subjt:  MNKGYPLL-DIDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIR

Query:  NYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AKAWLDSFSPNSITYW
         YA P F+ LN GI+ P + A  FELKP+MFQML T+ QFSG+P EDPH H++LF        F+GV                 A+ WL+S    S+T W
Subjt:  NYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AKAWLDSFSPNSITYW

Query:  NDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIAT
        NDL EKFL K+FP N NAK R EI  F+Q  +E L  AW+RF+ L+RKCPHHG+  CI +E FY+GL+  +K +V+AS NG+ L KS N+A+ IL+TIAT
Subjt:  NDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIAT

Query:  NNRHWGET
         N  W  +
Subjt:  NNRHWGET

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]9.2e-5750.23Show/hide
Query:  QENLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGV
        + N I + +DR +AIR YA P+F  LNPGI+ P + APHFELKP+MFQML T+ QF G P EDPH HI+ F                          R  
Subjt:  QENLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGV

Query:  AKAWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFL
        A+AWL++  P+S+T WNDLAEKFL K+FP  +NAK+R+EI+ F+QS +E    AW+RF+ L+RKCPHHG+  CI LE FY+GL+ AS+ +++AS NG+ L
Subjt:  AKAWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFL

Query:  KKSTNEAHAILDTIATNNRHW
         KS NEA  IL+ IA+NN  W
Subjt:  KKSTNEAHAILDTIATNNRHW

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]1.4e-5743.62Show/hide
Query:  LLDIDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVF
        L  IDPEIERTFR+RRKEQ+ KK    + N  +  E                                   V  V  + N I + +DR +AIR YA P+F
Subjt:  LLDIDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVF

Query:  QTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAKAWLDSFSPNSITYWNDLAEKF
          LNPGI+ P + APHFELKP+MFQML T+ QF G P EDPH HI+ F                          R  A+AWL++  P+S+T WNDLAEKF
Subjt:  QTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAKAWLDSFSPNSITYWNDLAEKF

Query:  LEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNRHW
        L K+FP  +NAK+R+EI+ F+Q  +E    AW+RF+ L+RKCPHHG+  CI LE FY+GL+ A++ +++A  NG+ L KS NEA  IL+ IA+NN  W
Subjt:  LEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNRHW

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333942.6e-4940.36Show/hide
Query:  RKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELK
        ++KK+  + N Q+    A   +EF             +N     N  RI +        N I++ +DR +AIR YA P  + LNP I+ P + A  FELK
Subjt:  RKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELK

Query:  PMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAKAWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVF
        P+MFQML T+ QF GLP+EDPH H+K F                          R  AK+WL++ +  +I  WN L EKFL K+FP  +NA++R EI+VF
Subjt:  PMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAKAWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVF

Query:  RQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNRHWGE
        +Q  ++ L  AW+RF+ ++RKCPHHGL  CI +E FY+GL+ A+K +V+AS NG+ L K+ NEA+ IL+ IA+NN  W +
Subjt:  RQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNRHWGE

A0A6J1EQ90 uncharacterized protein LOC1114364119.6e-5241.12Show/hide
Query:  IDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVFQTL
        +DPEIERTFRRR K    KKK+  + N Q+    A   +EF             +N     N  RI + P        I++ +DR +AIR YA P  + L
Subjt:  IDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVFQTL

Query:  NPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF---------------FRGV-----------------AKAWLDSFSPNSITYWNDL
        NP I+ P +    FELKP+MFQML T+ QF GLP EDPH H+K F               F+GV                 AK+WL++ +P +I  WN L
Subjt:  NPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF---------------FRGV-----------------AKAWLDSFSPNSITYWNDL

Query:  AEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNR
        AE FL K+FP  +NA+++ EI+ F+Q  +E L  A +RF+ ++RKCPHHGL  CI +E FY+GL+  +K +V+AS NG+ L K+ NEA+ IL+ IA+NN 
Subjt:  AEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNR

Query:  HWGE
         W +
Subjt:  HWGE

A0A6J1G7Q6 uncharacterized protein LOC1114515989.9e-4946.58Show/hide
Query:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AK
        N I++ +DR +AIR YA P  + LNP I+ P + A  FELKP+MFQML T+ QF GL ++DPH H+K F        F+GV                 AK
Subjt:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AK

Query:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK
        +WL+  +   I  WN LAEKFL K+FP  ++A++R EI+ F++  NE L  AW+RF+  +RKCPHHGL  CI +E FY+GL+ A+K +V+AS NG  L K
Subjt:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK

Query:  STNEAHAILDTIATNNRHW
        + NEA+ IL+ IA+NN  W
Subjt:  STNEAHAILDTIATNNRHW

A0A6J1H7E4 uncharacterized protein LOC1114611683.3e-5247.96Show/hide
Query:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AK
        N I + +DR +AIR YA P    LNP I+ P + A  FELKP+MFQML T+ QF GLP+EDPH H+K F        F+GV                 AK
Subjt:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF--------FRGV-----------------AK

Query:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK
        +WL++ +P +I  WN LAEKFL K+FP  +NA++R EI+ F+Q  +E L  AW+RF+ ++RKCPHHGL  CI +E FY+GL+ A+K +V+AS NG+ L K
Subjt:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK

Query:  STNEAHAILDTIATNNRHWGE
        + NEA+ IL+ IA+NN  W +
Subjt:  STNEAHAILDTIATNNRHWGE

U5CUI2 Retrotrans_gag domain-containing protein1.3e-5649.1Show/hide
Query:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAK
        N I + +DR +AIR YA P+F  LNPGI+ P + AP FELKP+MFQML T+ QFSG+P EDPH H++ F                          R  A+
Subjt:  NLIYITEDRNKAIRNYALPVFQTLNPGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLF-------------------------FRGVAK

Query:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK
        +WL++  P+S+T WNDLAEKFL K+FP  +NAK+R+EI+ F+Q  +E    AW+RF+ L+RKCPHHG+  CI +E FY+GL+ AS+ +++AS NG+ L K
Subjt:  AWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLVRKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKK

Query:  STNEAHAILDTIATNNRHWGET
        S NEA  IL+TIA+NN  W  T
Subjt:  STNEAHAILDTIATNNRHWGET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGGGGTATCCACTCCTTGACATTGATCCTGAGATAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAACAACAAAAGTTGAACAC
ACAGGAATTTCATGAAGAAGCCTCTTACATACAAGAGTTTTCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAGAATCGTGGAAGGGAGCAAAATGGTGGGA
GAATTCCTTCAGTTCCACCAGTGCCACAACAAGAAAATCTAATCTACATTACTGAAGACCGCAATAAAGCAATAAGGAACTATGCTTTACCAGTTTTCCAGACACTAAAT
CCAGGAATTTTGGAACCACTACTAGATGCTCCACACTTTGAACTTAAACCAATGATGTTCCAGATGTTGAATACAATGGACCAATTCTCTGGACTTCCAAATGAAGATCC
ACACAAACATATTAAGCTATTTTTTAGAGGAGTTGCTAAAGCTTGGTTGGATTCATTTTCTCCAAACTCCATCACTTATTGGAATGATTTGGCGGAGAAATTCTTAGAAA
AGTTTTTTCCCTCCAATAAAAATGCCAAGTATAGAGCCGAAATTATTGTTTTTAGACAATCTTACAATGAACCTTTGGATGCAGCTTGGAAAAGATTTCAAAGGTTGGTT
CGAAAGTGTCCACACCATGGATTGTCTGCTTGCATTATCTTGGAGCATTTTTATAGTGGATTAGATCAAGCTTCAAAGGCACTAGTAAACGCATCTACGAACGGATCTTT
CTTGAAGAAGTCTACTAATGAGGCGCATGCTATTTTAGACACCATAGCCACCAACAATCGCCATTGGGGAGAGACCGAGCCTAGCGAACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGGGGTATCCACTCCTTGACATTGATCCTGAGATAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAACAACAAAAGTTGAACAC
ACAGGAATTTCATGAAGAAGCCTCTTACATACAAGAGTTTTCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAGAATCGTGGAAGGGAGCAAAATGGTGGGA
GAATTCCTTCAGTTCCACCAGTGCCACAACAAGAAAATCTAATCTACATTACTGAAGACCGCAATAAAGCAATAAGGAACTATGCTTTACCAGTTTTCCAGACACTAAAT
CCAGGAATTTTGGAACCACTACTAGATGCTCCACACTTTGAACTTAAACCAATGATGTTCCAGATGTTGAATACAATGGACCAATTCTCTGGACTTCCAAATGAAGATCC
ACACAAACATATTAAGCTATTTTTTAGAGGAGTTGCTAAAGCTTGGTTGGATTCATTTTCTCCAAACTCCATCACTTATTGGAATGATTTGGCGGAGAAATTCTTAGAAA
AGTTTTTTCCCTCCAATAAAAATGCCAAGTATAGAGCCGAAATTATTGTTTTTAGACAATCTTACAATGAACCTTTGGATGCAGCTTGGAAAAGATTTCAAAGGTTGGTT
CGAAAGTGTCCACACCATGGATTGTCTGCTTGCATTATCTTGGAGCATTTTTATAGTGGATTAGATCAAGCTTCAAAGGCACTAGTAAACGCATCTACGAACGGATCTTT
CTTGAAGAAGTCTACTAATGAGGCGCATGCTATTTTAGACACCATAGCCACCAACAATCGCCATTGGGGAGAGACCGAGCCTAGCGAACTCTAG
Protein sequenceShow/hide protein sequence
MNKGYPLLDIDPEIERTFRRRRKEQRRKKKEQQKLNTQEFHEEASYIQEFSMEPPGVDPQVDPQNRGREQNGGRIPSVPPVPQQENLIYITEDRNKAIRNYALPVFQTLN
PGILEPLLDAPHFELKPMMFQMLNTMDQFSGLPNEDPHKHIKLFFRGVAKAWLDSFSPNSITYWNDLAEKFLEKFFPSNKNAKYRAEIIVFRQSYNEPLDAAWKRFQRLV
RKCPHHGLSACIILEHFYSGLDQASKALVNASTNGSFLKKSTNEAHAILDTIATNNRHWGETEPSEL