; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022060 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022060
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:17201378..17202115
RNA-Seq ExpressionLag0022060
SyntenyLag0022060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG68182.1 hypothetical protein EZV62_003117 [Acer yangbiense]1.2e-1228.77Show/hide
Query:  QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSL
        QSL+ + F   LW +K        L   +  L+ +FWW +W LRN+   G   +  D       +  SF  +VAF      C++ +S++N     WKP +
Subjt:  QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSL

Query:  ELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEA
        E  +K+N DA++++  G  G G V+ +  G V+LA+C+  +   +   +AE   +L G+ +A  S    F ++T++L +VK++  +S  ++++GL++ E 
Subjt:  ELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEA

Query:  RVLLLQDLVMQS
         ++   D++ QS
Subjt:  RVLLLQDLVMQS

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.2e-1431.31Show/hide
Query:  WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR----GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN
        W+CSKF  FL+    P+  +    +    + ++      +VV  WA+WN RN   +    GG++   DL   S +YL  +Q         SS  +L    
Subjt:  WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR----GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN

Query:  RP-TCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDV
         P    W+P     LK+NVDA+   E+  AG G ++ ++ G V L     L R   VD  E +A+  G+ +A ++GF +F +ET+SLR+  +L  +  D 
Subjt:  RP-TCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDV

Query:  SEVGLLMDEARVLL
        SEVG+L    ++ L
Subjt:  SEVGLLMDEARVLL

XP_023884925.1 uncharacterized protein LOC111997106 [Quercus suber]5.7e-1530.22Show/hide
Query:  ERLAMLDFELVVVFWWAVWNLRNSLVRGGNV-VEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPT-CTWKPSLELDLKLNVDASVNLETGNAGG
        ERL+  + EL     W VWN RN L+ GG + V   L +R+ +Y++ F+          S + +  + +P   TW+P    + K+N DA++  E G  G 
Subjt:  ERLAMLDFELVVVFWWAVWNLRNSLVRGGNV-VEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPT-CTWKPSLELDLKLNVDASVNLETGNAGG

Query:  GCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLL
        G ++ N  GEV+ A     P     D AE  A    ++ A  +GFS+  VE +++ +V+ ++   +++S +G+++D+ R LL
Subjt:  GCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLL

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]3.7e-1426.85Show/hide
Query:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKD-LTQRSSDYLASFQRVVAFRGVVSSCISLS
        W CP  +  W  S+ +     L   +   +   +  RL   D  L +V  W +W+ RNS++ GG + E   L +R  ++L  F +V     V+    ++ 
Subjt:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKD-LTQRSSDYLASFQRVVAFRGVVSSCISLS

Query:  SSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESD
        +       W+P      K+N DA++  ++G +G G V+ N  GEV+ A     P     D AE  A    ++ A  +GF++  +E +S+ ++K L+  S 
Subjt:  SSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESD

Query:  DVSEVGLLMDEARVLL
        D+S VG ++ + + L+
Subjt:  DVSEVGLLMDEARVLL

XP_030941688.1 uncharacterized protein LOC115966628 [Quercus lobata]3.3e-1527.12Show/hide
Query:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKE---RLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEK-DLTQRSSDYLASFQRVVAFRGVVSSCI
        W CP  +  W  S      Q  T   ++ +L    E   RL+  +FEL +   W +WN RN+++ GG + +   L +R+  YL  +++           +
Subjt:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKE---RLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEK-DLTQRSSDYLASFQRVVAFRGVVSSCI

Query:  SLSSSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNG
        S+ S  +    W+P      KLN DA++  E G +G G ++ N RGEV+ A  +  P  W  + AE  A    V+ A  +GF++  +E +++ ++K +  
Subjt:  SLSSSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNG

Query:  ESDDVSEVGLLMDEARVLLLQDLVMQSLVHATVWEN
         S D S +G +  +          +Q LVH   W +
Subjt:  ESDDVSEVGLLMDEARVLLLQDLVMQSLVHATVWEN

TrEMBL top hitse value%identityAlignment
A0A5C7IHD9 RNase H domain-containing protein5.7e-1328.77Show/hide
Query:  QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSL
        QSL+ + F   LW +K        L   +  L+ +FWW +W LRN+   G   +  D       +  SF  +VAF      C++ +S++N     WKP +
Subjt:  QSLTPMNFESILWAVK------ERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCIS-LSSSNRPTCTWKPSL

Query:  ELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEA
        E  +K+N DA++++  G  G G V+ +  G V+LA+C+  +   +   +AE   +L G+ +A  S    F ++T++L +VK++  +S  ++++GL++ E 
Subjt:  ELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCI-FLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEA

Query:  RVLLLQDLVMQS
         ++   D++ QS
Subjt:  RVLLLQDLVMQS

A0A6J1CDQ4 uncharacterized protein LOC1110105331.4e-1130.1Show/hide
Query:  SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN-------RPTCTWKPSLELDLKLNV
        +IL   ++ L   DFE +VVF W++WN RN+ V     VE  DL    S Y+A+F+         +  +S S          +    W P+ E   KL  
Subjt:  SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN-------RPTCTWKPSLELDLKLNV

Query:  DASVNLETGNAG-GGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLL
        DAS +    NAG G  ++ + RG+VL +   +L     VD AE  A + G+++A ++G S   +ET+SLR+  +   + + +S+ G +++  +  L
Subjt:  DASVNLETGNAG-GGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLL

A0A6J1DBJ7 uncharacterized protein LOC1110189731.0e-1431.31Show/hide
Query:  WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR----GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN
        W+CSKF  FL+    P+  +    +    + ++      +VV  WA+WN RN   +    GG++   DL   S +YL  +Q         SS  +L    
Subjt:  WRCSKF-EFLYQSLTPMNFE--SILWAVKERLAMLDFELVVVFWWAVWNLRNSLVR----GGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSN

Query:  RP-TCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDV
         P    W+P     LK+NVDA+   E+  AG G ++ ++ G V L     L R   VD  E +A+  G+ +A ++GF +F +ET+SLR+  +L  +  D 
Subjt:  RP-TCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDV

Query:  SEVGLLMDEARVLL
        SEVG+L    ++ L
Subjt:  SEVGLLMDEARVLL

A0A803Q185 Uncharacterized protein1.1e-1124.77Show/hide
Query:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLS
        W C   K  W+   F+   +     +  + L  +   ++   FE+ +V  W++WN RN+    G V +  ++ +     L  FQ                
Subjt:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLS

Query:  SSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESD
           R    WK     ++K+NVDASV    G +G GCV+   +G+VL A+   + R +     E  A+L G+Q+  Q     F +E + L  +++++ + D
Subjt:  SSNRPTCTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESD

Query:  DVSEVGLLMDEARVLLLQDLVM
           +V  L+++ R+LL  + V+
Subjt:  DVSEVGLLMDEARVLLLQDLVM

A0A803QHW9 Uncharacterized protein4.4e-1328.91Show/hide
Query:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLS
        + CP  K  W+ S F   ++    M+    ++ +    +  DFEL V   WA+W+ RN ++ GG + E K  T  + DYL  +           +  S+S
Subjt:  WVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVE-KDLTQRSSDYLASFQRVVAFRGVVSSCISLS

Query:  SSNRPT--------CTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLV
         +   T         +W+P     LKLNVDA+VN  +   G G ++ +  G V+ A       C+  D  E  AL   +  A Q      H+ET+SLR+ 
Subjt:  SSNRPT--------CTWKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLV

Query:  KILNGESDDVS
          L   S D+S
Subjt:  KILNGESDDVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTTTGGGTGTGTCCATTTGTGAAATATCAGTGGCGTTGCTCCAAGTTCGAGTTCCTGTATCAGTCCTTAACTCCCATGAATTTTGAATCAATTTTGTGGGCTGT
TAAGGAGAGGCTGGCTATGTTGGACTTCGAGCTTGTGGTAGTATTTTGGTGGGCAGTGTGGAACCTGCGTAATTCATTGGTCCGGGGAGGGAATGTGGTTGAAAAGGACT
TAACGCAAAGGTCCTCTGATTATTTAGCCTCTTTTCAACGTGTTGTAGCGTTTCGAGGGGTGGTGTCTTCATGTATCTCCCTGTCTTCTTCTAATCGGCCGACCTGCACT
TGGAAGCCGTCGTTAGAGCTAGATTTAAAACTGAATGTAGATGCCTCGGTTAACCTGGAAACTGGGAATGCAGGAGGAGGTTGCGTTCTGGGTAATGCTAGGGGTGAAGT
CTTACTGGCAACATGTATTTTTCTTCCTCGATGTTGGTGTGTGGATGTGGCTGAAGATTGGGCTCTGCTCACTGGAGTCCAAATTGCACGTCAATCTGGGTTTTCGCAAT
TTCATGTGGAGACGAACTCTTTGAGGCTAGTCAAGATTTTAAATGGGGAGTCTGATGATGTCTCTGAGGTTGGCTTGCTCATGGATGAGGCTCGGGTTTTGCTGCTACAG
GACCTCGTTATGCAAAGTCTCGTTCACGCCACGGTCTGGGAAAATGGCAACCCATATTATGGCTTCTCTAGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTTTGGGTGTGTCCATTTGTGAAATATCAGTGGCGTTGCTCCAAGTTCGAGTTCCTGTATCAGTCCTTAACTCCCATGAATTTTGAATCAATTTTGTGGGCTGT
TAAGGAGAGGCTGGCTATGTTGGACTTCGAGCTTGTGGTAGTATTTTGGTGGGCAGTGTGGAACCTGCGTAATTCATTGGTCCGGGGAGGGAATGTGGTTGAAAAGGACT
TAACGCAAAGGTCCTCTGATTATTTAGCCTCTTTTCAACGTGTTGTAGCGTTTCGAGGGGTGGTGTCTTCATGTATCTCCCTGTCTTCTTCTAATCGGCCGACCTGCACT
TGGAAGCCGTCGTTAGAGCTAGATTTAAAACTGAATGTAGATGCCTCGGTTAACCTGGAAACTGGGAATGCAGGAGGAGGTTGCGTTCTGGGTAATGCTAGGGGTGAAGT
CTTACTGGCAACATGTATTTTTCTTCCTCGATGTTGGTGTGTGGATGTGGCTGAAGATTGGGCTCTGCTCACTGGAGTCCAAATTGCACGTCAATCTGGGTTTTCGCAAT
TTCATGTGGAGACGAACTCTTTGAGGCTAGTCAAGATTTTAAATGGGGAGTCTGATGATGTCTCTGAGGTTGGCTTGCTCATGGATGAGGCTCGGGTTTTGCTGCTACAG
GACCTCGTTATGCAAAGTCTCGTTCACGCCACGGTCTGGGAAAATGGCAACCCATATTATGGCTTCTCTAGCTTTTAG
Protein sequenceShow/hide protein sequence
MFFWVCPFVKYQWRCSKFEFLYQSLTPMNFESILWAVKERLAMLDFELVVVFWWAVWNLRNSLVRGGNVVEKDLTQRSSDYLASFQRVVAFRGVVSSCISLSSSNRPTCT
WKPSLELDLKLNVDASVNLETGNAGGGCVLGNARGEVLLATCIFLPRCWCVDVAEDWALLTGVQIARQSGFSQFHVETNSLRLVKILNGESDDVSEVGLLMDEARVLLLQ
DLVMQSLVHATVWENGNPYYGFSSF