CuGenDBv2

Gene ID	Lag0022061
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr7:17203466..17203902
RNA-Seq Expression	Lag0022061
Synteny	Lag0022061
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4316864.1 unnamed protein product [Prunus armeniaca]

3.0e-19

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Query:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLFPTLPL-----TNRVCELFSASGQWDEENIRLHFTASDCESIL
        FNQALL KQ W +   PHSL+  +LK+RYFP   F  A  G  PSF W+SLLWGR L   L L     T+RVC+LF+ASG WD   +   F+  + E+IL
Subjt:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLFPTLPL-----TNRVCELFSASGQWDEENIRLHFTASDCESIL

Query:  RIPLPNATTD
         IPL   T D
Subjt:  RIPLPNATTD

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]

4.1e-21

39.31

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+WRSL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
         RVC+LF++SGQW+   ++  F   + ++IL+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]

2.7e-20

38.62

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+W SL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
         RVC+LF++SGQW+   ++  F   + ++IL+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]

1.7e-19

37.93

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+WRSL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
          VC+LF++SGQW+   ++  F   + ++ L+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

XP_008237273.1 PREDICTED: uncharacterized protein LOC103336015 [Prunus mume]

8.6e-19

40.58

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Query:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL---------------------------------FPTLPLTNRV
        FNQALL KQ W +   PHSL+  +LK+RYFP   F  A  G  PSF W+SLLWGR L                                  PTLP T+RV
Subjt:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL---------------------------------FPTLPLTNRV

Query:  CELFSASGQWDEENIRLHFTASDCESILRIPLPNATTD
        C+LF+ASG WD   +   F+  + E+IL IPL     D
Subjt:  CELFSASGQWDEENIRLHFTASDCESILRIPLPNATTD

TrEMBL top hits

e value

%identity

Alignment

A0A251NPF0 Reverse transcriptase domain-containing protein

2.0e-21

39.31

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+WRSL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
         RVC+LF++SGQW+   ++  F   + ++IL+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

A0A5E4FZN9 PREDICTED: retrotransposon

8.4e-20

37.93

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+WRSL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
          VC+LF++SGQW+   ++  F   + ++ L+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

A0A6J5Y0D5 Uncharacterized protein

1.4e-19

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Query:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLFPTLPL-----TNRVCELFSASGQWDEENIRLHFTASDCESIL
        FNQALL KQ W +   PHSL+  +LK+RYFP   F  A  G  PSF W+SLLWGR L   L L     T+RVC+LF+ASG WD   +   F+  + E+IL
Subjt:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLFPTLPL-----TNRVCELFSASGQWDEENIRLHFTASDCESIL

Query:  RIPLPNATTD
         IPL   T D
Subjt:  RIPLPNATTD

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

2.0e-21

39.31

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+WRSL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
         RVC+LF++SGQW+   ++  F   + ++IL+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

M5WJW2 Reverse transcriptase domain-containing protein

1.3e-20

38.62

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT
        +E FNQALLAKQCW I R P SL+  + ++RY P++ F EAE+G  PSF+W SL WG+ L                                  P LPL+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLF---------------------------------PTLPLT

Query:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI
         RVC+LF++SGQW+   ++  F   + ++IL+IPL +    D LI
Subjt:  NRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDHLI

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

1.8e-11

54.39

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Query:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL
        FNQALLAKQ + I  +PH+LL  +L+SRYFP  +  E  +G RPS+ WRS++ GR L
Subjt:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

3.9e-09

51.85

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Query:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSL
        +E FN ALL KQ W +   P SL+  V KSRYF       A LG RPSFVW+S+
Subjt:  MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.3e-12

54.39

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Query:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL
        FNQALLAKQ + I  +PH+LL  +L+SRYFP  +  E  +G RPS+ WRS++ GR L
Subjt:  FNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSL

Sequences

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CDS sequence

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ATGGAACTCTTTAATCAAGCCTTGTTGGCCAAACAATGTTGGTGGATTTTCCGTGAGCCTCACTCCCTTCTTGGGTTGGTCCTGAAGAGTCGTTATTTCCCGACCTTGAC
GTTTTTCGAGGCTGAGTTGGGCCATCGGCCTTCTTTTGTTTGGCGGAGTCTGCTATGGGGCCGTTCACTTTTCCCCACTCTGCCATTGACAAACCGGGTTTGTGAGTTGT
TTTCTGCCTCAGGTCAGTGGGATGAGGAGAATATACGATTGCATTTTACAGCGTCAGATTGTGAATCGATTTTGCGGATTCCCCTTCCTAATGCTACGACTGACGATCAT
CTGATATGA

mRNA sequence

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Protein sequence

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MELFNQALLAKQCWWIFREPHSLLGLVLKSRYFPTLTFFEAELGHRPSFVWRSLLWGRSLFPTLPLTNRVCELFSASGQWDEENIRLHFTASDCESILRIPLPNATTDDH
LI

Lag0022061 (gene) of Sponge gourd (AG-4) v1 genome