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Lag0022083 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022083
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr7:17756461..17757471
RNA-Seq ExpressionLag0022083
SyntenyLag0022083
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046571.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-3343.82Show/hide
Query:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF
        AP  P   Q V + L A +A    DF+KY+  TF     +PT+ + W  + E IFRYM CPE+Q+V C VF L +    WW +AER +   +  +TW QF
Subjt:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF

Query:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT
        KE F+ K++S  +++ K +EFL L QG+ +VE+Y+ EF  LSRFAP+MV  EA +T++F+ GLR D+Q +V  L   T
Subjt:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT

KAA0055932.1 pol protein [Cucumis melo var. makuwa]8.8e-3443.82Show/hide
Query:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF
        AP  P   Q V + L A +A    DF+KY+  TF     +PT+ + W  + E IFRYM CPE+Q+V C VF L +    WW +AER +   +  +TW QF
Subjt:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF

Query:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT
        KE F+ K++S  +++ K +EFL L QG+ +VE+Y+ EF  LSRFAP+MV  EA +T++F+ GLR D+Q +V  L   T
Subjt:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT

TYK01089.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-3441.8Show/hide
Query:  DEDLPDEQAPEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSI
        ++  P   AP P      V     + +A    DF+KY+  TF     DPT+ + W ++ E IFRYM C E+Q+V C VF+L +    WW +AER +   +
Subjt:  DEDLPDEQAPEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSI

Query:  GPVTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRTTQR
        G +TW QFKE F+ K++S  +R  K +EFL L QG++ VE+Y+ EF  LSRFAPEM+ TEA +  +F+ GLR D+Q +V V  Q   +R
Subjt:  GPVTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRTTQR

XP_022156662.1 uncharacterized protein LOC111023512 [Momordica charantia]1.1e-4158.23Show/hide
Query:  AFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQFKEVFFQKYYSTIIRYR
        + +A    DFKKYD  +F   +VDP   EAW +  E IFRYM C EEQ+V C VF+L++DA LWW S ER IDVS GPVTWLQFKE FFQ+YY  I  YR
Subjt:  AFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQFKEVFFQKYYSTIIRYR

Query:  KEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVL
        K+ EFL L Q  +SVEEY+ EFT+LSRFAPE+VDTEA K +RFI+ L+ + +  V  L
Subjt:  KEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVL

XP_038891712.1 uncharacterized protein LOC120081110 [Benincasa hispida]8.5e-3747.46Show/hide
Query:  PDEQAPEPPASTQTVTLTLEAF--QALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGP
        P +Q P+          ++  F  +A    DFKKY+  TF+    DPT  E W +  E IFRYM CPE+Q+V C VF+L + A +WW+ AER + V   P
Subjt:  PDEQAPEPPASTQTVTLTLEAF--QALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGP

Query:  VTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVV
        VTW QFKE F+ KY+S  +RY K++EFL L QG +SVEEY+ EF  LSRFAPE+V TEA + +RFI GL+  ++ +V
Subjt:  VTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVV

TrEMBL top hitse value%identityAlignment
A0A5A7TSL0 Reverse transcriptase5.5e-3443.82Show/hide
Query:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF
        AP  P   Q V + L A +A    DF+KY+  TF     +PT+ + W  + E IFRYM CPE+Q+V C VF L +    WW +AER +   +  +TW QF
Subjt:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF

Query:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT
        KE F+ K++S  +++ K +EFL L QG+ +VE+Y+ EF  LSRFAP+MV  EA +T++F+ GLR D+Q +V  L   T
Subjt:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT

A0A5A7UJ81 Reverse transcriptase4.2e-3443.82Show/hide
Query:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF
        AP  P   Q V + L A +A    DF+KY+  TF     +PT+ + W  + E IFRYM CPE+Q+V C VF L +    WW +AER +   +  +TW QF
Subjt:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF

Query:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT
        KE F+ K++S  +++ K +EFL L QG+ +VE+Y+ EF  LSRFAP+MV  EA +T++F+ GLR D+Q +V  L   T
Subjt:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT

A0A5D3BSM2 Reverse transcriptase2.5e-3441.8Show/hide
Query:  DEDLPDEQAPEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSI
        ++  P   AP P      V     + +A    DF+KY+  TF     DPT+ + W ++ E IFRYM C E+Q+V C VF+L +    WW +AER +   +
Subjt:  DEDLPDEQAPEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSI

Query:  GPVTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRTTQR
        G +TW QFKE F+ K++S  +R  K +EFL L QG++ VE+Y+ EF  LSRFAPEM+ TEA +  +F+ GLR D+Q +V V  Q   +R
Subjt:  GPVTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRTTQR

A0A5D3CQB5 Reverse transcriptase5.5e-3443.82Show/hide
Query:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF
        AP  P   Q V + L A +A    DF+KY+  TF     +PT+ + W  + E IFRYM CPE+Q+V C VF L +    WW +AER +   +  +TW QF
Subjt:  APEPPASTQTVTLTLEAFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQF

Query:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT
        KE F+ K++S  +++ K +EFL L QG+ +VE+Y+ EF  LSRFAP+MV  EA +T++F+ GLR D+Q +V  L   T
Subjt:  KEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRT

A0A6J1DSJ6 uncharacterized protein LOC1110235125.5e-4258.23Show/hide
Query:  AFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQFKEVFFQKYYSTIIRYR
        + +A    DFKKYD  +F   +VDP   EAW +  E IFRYM C EEQ+V C VF+L++DA LWW S ER IDVS GPVTWLQFKE FFQ+YY  I  YR
Subjt:  AFQALMNNDFKKYD--TFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDALLWWRSAERSIDVSIGPVTWLQFKEVFFQKYYSTIIRYR

Query:  KEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVL
        K+ EFL L Q  +SVEEY+ EFT+LSRFAPE+VDTEA K +RFI+ L+ + +  V  L
Subjt:  KEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATACAACAAGATTCTCATCATCGTCAGAGGCCTGACACTCCCAGAGCAAGTAGATCCTCTATCGATCAATATGATGAAGATCTCCCTGATGAGCAAGCTCCTGA
ACCTCCAGCATCGACGCAGACTGTCACTTTGACTTTAGAGGCTTTTCAGGCGCTTATGAATAATGATTTTAAGAAGTACGACACATTTAGCAAGAAAACCGTAGACCCCA
CGGAGGTCGAAGCTTGGACCGCTACCACCGAAGAGATTTTTCGCTATATGGGATGCCCCGAGGAGCAACAGGTGTCGTGCATGGTTTTTATCCTAAGAAACGATGCCCTG
TTGTGGTGGAGATCGGCTGAGAGATCCATCGATGTAAGTATTGGACCGGTTACTTGGTTGCAGTTCAAGGAGGTGTTCTTCCAGAAATATTACTCGACCATTATCAGGTA
CAGAAAGGAGAAGGAATTCCTAACCTTGATGCAAGGAGAGAAGTCAGTAGAAGAATACGAGCTAGAGTTCACCCGACTGTCCCGTTTCGCCCCTGAAATGGTGGATACGG
AGGCGAAGAAGACAAAGAGGTTCATCTTGGGCCTCAGAGCTGACGTCCAGAGGGTTGTTGGAGTCCTTGGCCAACGGACTACGCAGCGGCCCTTCGAGCGACCACCTTTA
TGGGCATGCCAACTGTCAATGCAACTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATACAACAAGATTCTCATCATCGTCAGAGGCCTGACACTCCCAGAGCAAGTAGATCCTCTATCGATCAATATGATGAAGATCTCCCTGATGAGCAAGCTCCTGA
ACCTCCAGCATCGACGCAGACTGTCACTTTGACTTTAGAGGCTTTTCAGGCGCTTATGAATAATGATTTTAAGAAGTACGACACATTTAGCAAGAAAACCGTAGACCCCA
CGGAGGTCGAAGCTTGGACCGCTACCACCGAAGAGATTTTTCGCTATATGGGATGCCCCGAGGAGCAACAGGTGTCGTGCATGGTTTTTATCCTAAGAAACGATGCCCTG
TTGTGGTGGAGATCGGCTGAGAGATCCATCGATGTAAGTATTGGACCGGTTACTTGGTTGCAGTTCAAGGAGGTGTTCTTCCAGAAATATTACTCGACCATTATCAGGTA
CAGAAAGGAGAAGGAATTCCTAACCTTGATGCAAGGAGAGAAGTCAGTAGAAGAATACGAGCTAGAGTTCACCCGACTGTCCCGTTTCGCCCCTGAAATGGTGGATACGG
AGGCGAAGAAGACAAAGAGGTTCATCTTGGGCCTCAGAGCTGACGTCCAGAGGGTTGTTGGAGTCCTTGGCCAACGGACTACGCAGCGGCCCTTCGAGCGACCACCTTTA
TGGGCATGCCAACTGTCAATGCAACTCCAGTAG
Protein sequenceShow/hide protein sequence
MAIQQDSHHRQRPDTPRASRSSIDQYDEDLPDEQAPEPPASTQTVTLTLEAFQALMNNDFKKYDTFSKKTVDPTEVEAWTATTEEIFRYMGCPEEQQVSCMVFILRNDAL
LWWRSAERSIDVSIGPVTWLQFKEVFFQKYYSTIIRYRKEKEFLTLMQGEKSVEEYELEFTRLSRFAPEMVDTEAKKTKRFILGLRADVQRVVGVLGQRTTQRPFERPPL
WACQLSMQLQ